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整合生物信息学方法研究 TIMP3 与免疫细胞浸润:预后及临床病理意义

英文原题:An Integrative Bioinformatics Approach to Investigating TIMP3 and Immune Cell Infiltration: Prognostic and Clinicopathological Implications.

查看英文原题

An Integrative Bioinformatics Approach to Investigating TIMP3 and Immune Cell Infiltration: Prognostic and Clinicopathological Implications.

PubMed 2025/09/11(内容时间) Int J Mol Sci Q1 · IF 5.6(JCR 2025)

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中文摘要

金属蛋白酶组织抑制剂3(TIMP3)是基质金属蛋白酶(MMPs)的重要内源性抑制剂,在抑制转移和血管生成中发挥关键作用。

然而,其在结直肠癌(CRC)中的确切作用在很大程度上仍不明确。我们旨在通过生物信息学方法确定TIMP3在CRC患者中的预后意义。采用GEPIA、UALCAN、Kaplan-Meier plotter、LinkedOmics、cBioPortal、GeneMANIA、TIMER、TISIDB、ScTIME数据库、TISMO、TIDE、CAMOIP和TISCH2,全面分析TIMP3在CRC患者中的差异表达、预后价值、基因改变、信号通路、免疫细胞浸润、肿瘤微环境(TME)及相关基因。与癌旁正常组织相比,我们观察到CRC样本中TIMP3表达显著下调。基因互作网络阐明,TIMP3及其相关基因在癌症进展中发挥关键作用,尤其是在细胞外基质组织和血管生成等对结直肠癌至关重要的过程中。TME分析进一步表明,TIMP3表达与多种免疫细胞类型浸润水平、趋化因子和免疫调节剂密切相关。最重要的是,TIMP3表达升高者具有更好的免疫评分。

此外,TIMP3与主要浸润相关免疫细胞表现出强相关性,包括B细胞、CD8+ T细胞、CD4+ T细胞、巨噬细胞、中性粒细胞、树突状细胞和成纤维细胞。

此外,针对PD-1/PD-L1的免疫治疗反应改善与TIMP3水平升高相关。在TIMP3高表达组中,IL10、PDCD1、CD80、CXCL9和CXCR3显著增加。这凸显了TIMP3下调对CRC内免疫微环境的广泛影响。

我们的发现强调了TIMP3在CRC中的多方面参与,不仅影响与癌症进展相关的分子通路,还复杂地塑造了免疫微环境。因此,TIMP3有望成为潜在的CRC治疗靶点。

展开英文摘要原文

Tissue inhibitor of metalloproteinase 3 (TIMP3) serves as a prominent endogenous inhibitor of matrix metalloproteinases (MMPs), playing a crucial role in inhibiting metastasis, and angiogenesis.

However, its exact contributions to colorectal cancer (CRC) remain largely unidentified.

We aimed to ascertain the prognostic significance of TIMP3 in CRC patients through a bioinformatic approach. GEPIA, UALCAN, Kaplan-Meier plotter, LinkedOmics, cBioPortal, GeneMANIA, TIMER, TISIDB, the ScTIME database, TISMO, TIDE, CAMOIP, and TISCH2 were employed to comprehensively analyze the differential expression, prognostic value, genetic alterations, signaling pathways, immune cell infiltration, tumor microenvironment (TME) and associated genes of TIMP3 in CRC patients. Compared to adjacent normal tissues, we observed a significant downregulation of TIMP3 expression in CRC samples.

Gene interaction networks elucidated that TIMP3 and its associated genes play a pivotal role in cancer progression, particularly in processes critical to colorectal cancer, such as extracellular matrix organization and angiogenesis. Analysis of the TME further indicates that TIMP3 expression was intricately associated with diverse immune cell types infiltration levels, chemokines, and immunomodulators. Most importantly, those with elevated TIMP3 expression had improved immunological scores.

Moreover, TIMP3 exhibited strong correlations with major infiltration-related immune cells, including B cells, CD8 + T cells, CD4 + T cells, macrophages, neutrophils, dendritic cells, and fibroblasts.

Furthermore, improved immunotherapeutic responses against PD-1/PD-L1 were linked to elevated TIMP3 levels. In TIMP3-high groups, there was a considerable increase in IL10, PDCD1, CD80, CXCL9, and CXCR3. This highlights the extensive influence of TIMP3 downregulation on the immune milieu within CRC.

Our findings emphasize the multifaceted involvement of TIMP3 in CRC, not only influencing the molecular pathways associated with cancer progression, but also intricately shaping the immune microenvironment. As a result, TIMP3 appears promising as a potential CRC therapeutic target.

论文信息

作者
Bhola N、Bareja C、Jaiswal AK、Saluja D
单位
Dr. B.R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110007, India.India
期刊
International journal of molecular sciences2025 Sep 11
原文标识
PubMed 41009435 · DOI 10.3390/ijms26188867