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多组学揭示 ELAVL3 通过免疫原性细胞死亡调控神经母细胞瘤中的 MYCN:风险分层与实验研究

英文原题:Multi-omics revealed that ELAVL3 regulates MYCN in neuroblastoma via immunogenic cell death: Risk stratification and experimental research.

查看英文原题

Multi-omics revealed that ELAVL3 regulates MYCN in neuroblastoma via immunogenic cell death: Risk stratification and experimental research.

PubMed 2024/10/31(内容时间) Int J Biol Macromol Q1 · IF 8.7(JCR 2025)

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中文摘要

神经母细胞瘤(NB)是儿科常见且高度致命的恶性肿瘤,目前仍缺乏能够应对所有情况的有效治疗方法。免疫原性细胞死亡(ICD)在肿瘤细胞死亡中发挥关键作用,并可触发强效的抗肿瘤免疫应答。

在本研究中,我们利用来自1244例NB样本的bulk转录组数据和16个scRNA-seq数据集,通过多种机器学习方法报道了NB中的ICD相关指数(ICDR-Index)。

我们的结果表明,ICDR-Index能够准确识别NB患者的不同风险亚型,并为预后提供预测价值。重要的是,我们发现高危NB患者表现出显著较差的总生存期(OS)率、不良临床表型、较差的免疫细胞浸润以及对免疫治疗的低敏感性。

此外,我们确定ELAVL3是ICDR-Index中的关键基因,其高表达水平与NB的恶性程度和较差的OS相关。另外,靶向沉默ELAVL3可下调MYCN基因表达并降低NB细胞的恶性程度。

值得注意的是,转染si-ELAVL3的NB细胞增强了NK细胞的抗肿瘤活性。总之,本研究为预测NB患者的风险分层提供了途径,并揭示了ELAVL3调控NB细胞死亡的潜在机制。

展开英文摘要原文

Neuroblastoma (NB), a common and highly lethal malignant disease in pediatrics, still lacks an effective therapeutic approach that addresses all conditions. Immunogenic Cell Death (ICD) plays a crucial role in tumor cell death and triggers a potent anti-tumor immune response. In this study, we report an ICD-related index (ICDR-Index) in NB through various machine learning methodologies, utilizing bulk transcriptome data from 1244 NB samples and 16 scRNA-seq datasets.

Our results showed that the ICDR-Index could accurately identify different risk subtypes of patients with NB and provide predictive value for prognosis.

Importantly, we found that high-risk patients with NB exhibited significantly poor overall survival (OS) rates, adverse clinical phenotypes, poor immune cell infiltration, and low sensitivity to immunotherapy.

Furthermore, we identified ELAVL3 as a key gene within the ICDR-Index, where high expression levels were associated with malignancy and poor OS in NB.

Additionally, targeted silencing of ELAVL3 down-regulated MYCN gene expression and reduced the malignancy of NB cells.

Notably, the si-ELAVL3-transfected NB cells enhanced the anti-tumor activity of NK cells. Collectively, this study offers avenues for predicting the risk stratification of patients with NB and reveals a potential mechanism by which ELAVL3 regulates NB cell death.

论文信息

作者
Hong P、Hu Z、Lin J、Cui K、Gao Z、Tian X、Shi Q、Lin T
第一作者单位
Department of Urology, Children's Hospital of Chongqing Medical University; National Clinical Research Center for Child Health and Disorders; Ministry of Education Key Laboratory of Child Development and Disorders; Chongqing Key Laboratory of Structural Birth Defect and Reconstruction, China.China
通讯作者单位
Department of Urology, Children's Hospital of Chongqing Medical University; National Clinical Research Center for Child Health and Disorders; Ministry of Education Key Laboratory of Child Development and Disorders; Chongqing Key Laboratory of Structural Birth Defect and Reconstruction, China. Electronic address: 485141@hospital.cqmu.edu.cn.China
期刊
International journal of biological macromolecules2024 Dec
原文标识
PubMed 39486730 · DOI 10.1016/j.ijbiomac.2024.137045