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乳腺癌组织病理切片中 TIL(肿瘤浸润淋巴细胞)的自动检测与评分

英文原题:Automated Detection and Scoring of Tumor-Infiltrating Lymphocytes in Breast Cancer Histopathology Slides.

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Automated Detection and Scoring of Tumor-Infiltrating Lymphocytes in Breast Cancer Histopathology Slides.

PubMed 2023/07/15(内容时间) Cancers (Basel) Q2 · IF 4.8(JCR 2025)

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中文摘要

在癌症图像中检测TIL(肿瘤浸润淋巴细胞)(TILs)已变得非常重要,因为这些淋巴细胞可作为癌症检测和治疗过程中的生物标志物。

我们的目标是开发并应用一种利用深度学习模型的 TILs 检测工具,遵循两个连续步骤。首先,基于国际免疫肿瘤生物标志物工作组(IIOBWG)关于乳腺癌的指南,我们标注了 63 张大型病理成像切片,并注释了间质区域中的 TILs,以创建模型开发所需的数据集。在第二步中,采用并训练了多种机器学习模型来检测间质,其中 U-Net 深度学习结构达到了 98% 的准确率。在检测到间质区域后,采用 Mask R-CNN 模型进行 TILs 检测任务。R-CNN 模型在各种图像中检测到了 TILs,并被用作 TILs 检测工具 GUI 开发的骨干分析网络。这是首个结合两种深度学习模型在乳腺肿瘤组织病理学切片中于细胞水平检测 TILs 的研究。

我们的新方法可应用于大型癌症切片中的 TILs 评分。统计分析显示,所实施方法的输出与病理学家分配的评分具有 95% 的一致性,p 值为 0.045(n = 63)。这表明所开发软件的结果在统计学上有意义且高度准确。所实施的方法在分析整个肿瘤组织学切片以及新开发的 TILs 检测工具可用于生物医学和病理学应用中的研究目的,并可为研究人员和临床医生提供各种输入图像的 TIL 评分。未来需要使用来自不同来源的额外乳腺癌切片进行研究,以进一步训练和验证所开发的模型,从而实现更包容、更严谨和更稳健的临床应用。

展开英文摘要原文

Detection of tumor-infiltrating lymphocytes (TILs) in cancer images has gained significant importance as these lymphocytes can be used as a biomarker in cancer detection and treatment procedures.

Our goal was to develop and apply a TILs detection tool that utilizes deep learning models, following two sequential steps. First, based on the guidelines from the International Immuno-Oncology Biomarker Working Group (IIOBWG) on Breast Cancer, we labeled 63 large pathology imaging slides and annotated the TILs in the stroma area to create the dataset required for model development.

In the second step, various machine learning models were employed and trained to detect the stroma where U-Net deep learning structure was able to achieve 98% accuracy. After detecting the stroma area, a Mask R-CNN model was employed for the TILs detection task. The R-CNN model detected the TILs in various images and was used as the backbone analysis network for the GUI development of the TILs detection tool. This is the first study to combine two deep learning models for TILs detection at the cellular level in breast tumor histopathology slides.

Our novel approach can be applied to scoring TILs in large cancer slides. Statistical analysis showed that the output of the implemented approach had 95% concordance with the scores assigned by the pathologists, with a p -value of 0. 045 (n = 63). This demonstrated that the results from the developed software were statistically meaningful and highly accurate.

The implemented approach in analyzing whole tumor histology slides and the newly developed TILs detection tool can be used for research purposes in biomedical and pathology applications and it can provide researchers and clinicians with the TIL score for various input images. Future research using additional breast cancer slides from various sources for further training and validation of the developed models is necessary for more inclusive, rigorous, and robust clinical applications.

论文信息

作者
Yosofvand M、Khan SY、Dhakal R、Nejat A、Moustaid-Moussa N、Rahman RL、Moussa H
单位
Department of Mechanical Engineering, Texas Tech University, Lubbock, TX 79409, USA.United States
期刊
Cancers2023 Jul 15
原文标识
PubMed 37509295 · DOI 10.3390/cancers15143635