RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Spatial analysis of tumor-infiltrating lymphocytes in histological sections using deep learning techniques predicts survival in colorectal carcinoma.
Spatial analysis of tumor-infiltrating lymphocytes in histological sections using deep learning techniques predicts survival in colorectal carcinoma.
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本研究旨在探讨基于苏木精-伊红染色数字化全切片图像、通过深度学习(DL)方法量化的TIL(肿瘤浸润淋巴细胞)(TILs)空间分布对结直肠癌(CRC)患者预后的影响。在Yonsei队列(n = 180)中探讨了CRC患者TILs空间分布的预后影响,并在癌症基因组图谱(TCGA)队列(n = 268)中进行了验证。两名经验丰富的病理学家使用Klintrup-M kinen(KM)分级方法在最具侵袭性边缘(IM)手动测量TILs为0-3级,并与DL方法进行比较。使用Cohen's kappa系数测量TILs的评分者间一致性。
在对DL方法得出的空间TIL特征以及包括肿瘤分期、微卫星不稳定性和KRAS突变在内的临床病理变量进行多变量分析时,IM 200 m范围内的TIL密度(f_im200)仍然是Yonsei队列中无进展生存期(PFS)最显著的预后因素(风险比[HR] 0.004 [95%置信区间,CI,0.0001-0.15],p = 0.0028)。在使用TCGA数据集进行多变量分析时,f_im200对PFS保持预后意义(HR 0.031 [95% CI 0.001-0.645],p = 0.024)。手动KM分级的评分者间一致性在Yonsei队列(= 0.109)和TCGA队列(= 0.121)中均不显著。基于KM分级的生存分析在TCGA队列中显示PFS有统计学显著差异,但在Yonsei队列中则没有。基于DL方法对IM处TILs的自动量化显示出预测PFS的预后效用,并可为CRC患者提供稳健且可重复的TIL密度测量。
This study aimed to explore the prognostic impact of spatial distribution of tumor-infiltrating lymphocytes (TILs) quantified by deep learning (DL) approaches based on digitalized whole-slide images stained with hematoxylin and eosin in patients with colorectal cancer (CRC). The prognostic impact of spatial distributions of TILs in patients with CRC was explored in the Yonsei cohort (n = 180) and validated in The Cancer Genome Atlas (TCGA) cohort (n = 268). Two experienced pathologists manually measured TILs at the most invasive margin (IM) as 0-3 by the Klintrup-M kinen (KM) grading method and this was compared to DL approaches. Inter-rater agreement for TILs was measured using Cohen's kappa coefficient.
On multivariate analysis of spatial TIL features derived by DL approaches and clinicopathological variables including tumor stage, microsatellite instability, and KRAS mutation, TIL densities within 200 m of the IM (f_im200) remained the most significant prognostic factor for progression-free survival (PFS) (hazard ratio [HR] 0. 004 [95% confidence interval, CI, 0. 0001-0. 15], p = 0. 0028) in the Yonsei cohort. On multivariate analysis using the TCGA dataset, f_im200 retained prognostic significance for PFS (HR 0.
031 [95% CI 0. 001-0. 645], p = 0. 024). Inter-rater agreement of manual KM grading was insignificant in the Yonsei ( = 0. 109) and the TCGA ( = 0. 121) cohorts. The survival analysis based on KM grading showed statistically significant different PFS in the TCGA cohort, but not the Yonsei cohort. Automatic quantification of TILs at the IM based on DL approaches shows prognostic utility to predict PFS, and could provide robust and reproducible TIL density measurement in patients with CRC.
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