RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Serum hsa-miR-30e As a Potential Biomarker to Predict the Effect of Neoadjuvant Chemoradiation Therapy in Locally Advanced Rectal Cancer.
Serum hsa-miR-30e As a Potential Biomarker to Predict the Effect of Neoadjuvant Chemoradiation Therapy in Locally Advanced Rectal Cancer.
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通过计算机分析和实验室验证研究,识别与局部晚期直肠癌(LARC)患者新辅助放化疗(NCRT)反应相关的血清microRNA(miRNA)。
使用R软件套件中的GEO2R Limma包分析GSE68204和GSE68204数据集,以识别NCRT反应者中差异表达(DE)的miRNA。随后,我们使用定量实时聚合酶链反应检测20例LARC患者血清中上调的目标miRNA。采用逻辑回归评估血清miRNA水平对反应的影响。进行基因本体论和通路富集分析,以预测DE miRNA的相应功能。进一步研究枢纽靶基因表达与TIL(肿瘤浸润淋巴细胞)丰度之间的相关性。
hsa-miR-30e和hsa-miR-210被证实于NCRT反应者的肿瘤组织中上调。随后的液体活检研究显示,与无反应者相比,血清miR-30e水平与NCRT反应患者发生率增加2.47倍相关(p值=0.038,Mann-Whitney检验)。hsa-miR-30e的九个枢纽靶基因富集于包括免疫调节在内的通路中。这些枢纽靶基因的表达与TIL(肿瘤浸润淋巴细胞)的丰度相关。
总之,hsa-miR-30e被确定于NCRT反应者的直肠癌组织中上调。进一步研究表明,血清hsa-miR-30e水平升高与LARC患者有效的NCRT反应相关。
Objective: To identify serum microRNAs (miRNAs) correlated with response to neoadjuvant chemoradiation therapy (NCRT) in locally advanced rectal cancer (LARC) patients using in silico analysis and laboratory validation studies. Methods: GSE68204 and GSE68204 data sets were analyzed to identify differentially expressed (DE) miRNAs in NCRT responders using the GEO2R Limma package within the R software suite. Then we used quantitative real-time polymerase chain reaction to detect the upregulated target miRNAs in the serum of 20 LARC patients. Logistic regression was used to evaluate the effect of serum miRNA level on response. Gene Ontology and pathway enrichment analyses were performed to predict the corresponding functions of the DE miRNAs.
Correlation between the expression of the hub target genes and the abundance of tumor-infiltrating lymphocytes was further investigated. Results: hsa-miR-30e and hsa-miR-210 were verified to be upregulated in tumor tissues of NCRT responders. Subsequent liquid-biopsy studies revealed that the serum level of miR-30e was associated with a 2.
47-fold increased incidence of NCRT-responsive patients in comparison with nonresponders ( p -value = 0. 038, Mann-Whitney test). Nine hub target genes of hsa-miR-30e were enriched in pathways including immune regulation. The expression of these hub target genes was correlated with abundance of tumor-infiltrating lymphocytes. Conclusion: In summary, hsa-miR-30e was determined to be upregulated in rectal cancer tissues of NCRT-responders.
Further investigations showed that increased serum levels of hsa-miR-30e were associated with an effective NCRT response in LARC patients.
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