RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Identification of core genes mediating the association between obesity and hepatocellular carcinoma: A bioinformatics study based on mitochondrial metabolism and immune pathways.
Identification of core genes mediating the association between obesity and hepatocellular carcinoma: A bioinformatics study based on mitochondrial metabolism and immune pathways.
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ACAA1 以及可能的 ADI1 是与肥胖关联 HCC 相关的下调候选基因。它们的抑制可能通过将线粒体代谢重编程与免疫抑制性肿瘤微环境重塑相耦合,驱动肥胖相关 HCC 进展,代表潜在的治疗靶点。
肥胖与肝细胞癌(HCC)密切相关,但二者之间的分子机制尚不清楚。本研究旨在鉴定连接肥胖与HCC的线粒体代谢相关基因,并探讨其在调控代谢-免疫微环境中的作用。
来自肥胖(源自外周血单核细胞)和HCC(源自肝组织)队列的公共转录组数据集被整合。应用了一个多步骤生物信息学流程,结合差异表达分析(DEA)、加权基因共表达网络分析(WGCNA)和机器学习(ML)算法,以识别并验证枢纽基因。使用ssGSEA和相关性分析评估了与肿瘤免疫微环境的关联。
共鉴定出27个核心基因,显著富集于脂质代谢和免疫应答通路。其中,ML将ACAA1和ADI1列为下调的候选基因。发现数据集显示出较高的诊断潜力,但与ACAA1的稳健一致性相比,ADI1在肥胖外部验证中表现出更大的性能波动。两个基因的下调均与效应T/NK细胞脂质介导的功能耗竭以及免疫检查点和趋化因子网络紊乱相关,反映出免疫抑制性微环境。
Obesity is strongly associated with hepatocellular carcinoma (HCC), yet the molecular mechanisms linking them remain unclear. This study aimed to identify mitochondrial metabolism-related genes bridging obesity and HCC and to investigate their role in regulating the metabolic-immune microenvironment.
Public transcriptomic datasets from obesity (derived from peripheral blood mononuclear cells) and HCC (derived from liver tissue) cohorts were integrated. A multi-step bioinformatic pipeline combining differential expression analysis (DEA), weighted gene co-expression network analysis (WGCNA), and machine learning (ML) algorithms was applied to identify and validate hub genes. Associations with the tumor immune microenvironment were assessed using ssGSEA and correlation analyses.
27 core genes were identified, significantly enriched in lipid metabolism and immune response pathways. Among these, ML highlighted ACAA1 and ADI1 as downregulated candidate genes. While discovery datasets showed high diagnostic potential, ADI1 exhibited more variable performance in obesity external validation compared to the robust consistency of ACAA1. Downregulation of both genes correlated with effector T/NK cell lipid-mediated functional exhaustion and disrupted networks of immune checkpoints and chemokines, reflecting an immunosuppressive microenvironment.
ACAA1 and potentially ADI1 are downregulated candidate genes linking obesity to HCC. Their suppression likely drives obesity-related HCC progression by coupling mitochondrial metabolic reprogramming with immunosuppressive tumor microenvironment remodeling, representing potential therapeutic targets.
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