RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Prognostic signature and immune microenvironment characterization in colorectal cancer based on interleukin-related genes.
Prognostic signature and immune microenvironment characterization in colorectal cancer based on interleukin-related genes.
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基于 IRG 建立并验证了一种新的 CRC 预后模型,证明其能够预测 OS 并有效区分免疫炎症型(“热”)和非炎症型(“冷”)肿瘤微环境。IL20RB 的过表达及其功能相关性提示其参与免疫冷、基质丰富的表型,为进一步研究 IL 相关信号通路在 CRC 进展和靶向治疗中的作用提供了实验依据和基础。
结直肠癌(CRC)表现出显著的预后异质性,免疫检查点抑制剂仅对约10%-15%的错配修复缺陷/微卫星高度不稳定(dMMR/MSI-H)状态患者有益。因此,迫切需要既具有生物学可解释性又具有临床适用性的风险分层工具。
我们整合了来自TCGA-COAD/READ和GEO-GSE39582队列的转录组学和临床数据,共纳入1209例病例,并鉴定了25个白细胞介素相关基因(IRGs)。采用共识聚类,我们定义了两种不同的分子亚型。在训练队列中,LASSO-Cox回归筛选出12个IRGs用于构建预后风险评分模型,随后在独立队列和合并数据集中进行了验证。使用CIBERSORT、单样本基因集富集分析(ssGSEA)和ESTIMATE算法对免疫-基质微环境进行了表征。通过定量PCR(qPCR)和免疫组织化学(IHC)评估了IL20RB的表达,并通过小干扰RNA(siRNA)介导的敲低实验评估了其功能作用。
在联合队列中,该风险模型对1年、3年和5年OS的AUC值分别为0.683、0.684和0.629。在调整TNM分期和年龄后,风险评分仍是一个独立的预后因素。高风险组表现出“免疫冷、基质丰富”的表型,其特征是M2巨噬细胞和中性粒细胞富集。相比之下,低风险组表现出“免疫炎症”表型,CD8⁺ T细胞和NK细胞浸润增加。IL20RB在CRC组织和细胞系中显著过表达,其敲低抑制了细胞增殖、迁移和侵袭。
Colorectal cancer (CRC) exhibits substantial prognostic heterogeneity, and immune checkpoint inhibitors benefit only approximately 10%-15% of patients with mismatch repair-deficient/microsatellite instability-high (dMMR/MSI-H) status. Therefore, there is an urgent need for risk stratification tools that are both biologically interpretable and clinically applicable.
We integrated transcriptomic and clinical data from the TCGA-COAD/READ and GEO-GSE39582 cohorts, comprising 1209 cases, and identified 25 interleukin-related genes (IRGs). Using consensus clustering, we defined two distinct molecular subtypes. In the training cohort, LASSO-Cox regression identified 12 IRGs for constructing a prognostic risk score model, which was subsequently validated in both an independent cohort and the combined dataset. The immune-stromal microenvironment was characterized using CIBERSORT, Single-sample Gene Set Enrichment Analysis (ssGSEA), and the ESTIMATE algorithm. IL20RB expression was assessed via Quantitative PCR (qPCR) and Immunohistochemistry (IHC), and its functional role was evaluated through small interfering RNA (siRNA)-mediated knockdown assays.
The risk model achieved AUC values of 0.683, 0.684, and 0.629 for 1-, 3-, and 5-year OS, respectively, in the combined cohort. After adjustment for TNM stage and age, the risk score remained an independent prognostic factor. The high-risk group exhibited an "immune-cold, stroma-rich" phenotype, characterized by enrichment of M2 macrophages and neutrophils. In contrast, the low-risk group displayed an "immune-inflamed" phenotype, with increased infiltration of CD8⁺ T cells and NK cells. IL20RB was significantly overexpressed in CRC tissues and cell lines, and its knockdown suppressed cell proliferation, migration, and invasion.
A new prognostic model based on IRG was established and validated in CRC, demonstrating its ability to forecast OS and to effectively differentiate between immune-inflamed ("hot") and non-inflamed ("cold") tumor microenvironments. The overexpression and functional relevance of IL20RB suggest its involvement in the immune-cold, stroma-rich phenotype, providing experimental evidence and a foundation for further investigation into IL-related signaling pathways in CRC progression and targeted therapy.
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