RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Integrative meta-analysis and experimental validation reveal the oncogenic role of SACS and its therapeutic targeting potential in colorectal cancer.
Integrative meta-analysis and experimental validation reveal the oncogenic role of SACS and its therapeutic targeting potential in colorectal cancer.
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本研究旨在利用基于转录组的荟萃分析方法和机器学习算法,识别与结直肠癌(CRC)诊断和预后密切相关的核心基因。整合了GEO数据库中的9个CRC数据集,进行差异基因表达分析和WGCNA以识别关键基因。采用96种机器学习算法组合进一步筛选核心基因并验证其诊断性能。利用GSEA、CIBERSORT和ssGSEA分析核心基因的功能富集、分子通路及其与免疫微环境的关联。进行药物敏感性预测以评估核心基因对CRC药物反应的影响,并使用分子对接模拟识别靶向核心基因的候选化合物。共识别出26个核心基因,其中SACS基因的高表达与CRC患者的不良预后、晚期分期和特定病理亚型显著相关。GSEA揭示SACS高表达显著激活细胞周期调控通路和免疫通路,同时抑制代谢通路。
此外,体外实验证明SACS在CRC细胞中高表达,且其敲低显著抑制CRC细胞增殖,提示其在肿瘤生长中的功能作用。免疫分析显示,SACS高表达与活化的NK细胞呈正相关,但与Tregs和静息NK细胞呈负相关。药物敏感性分析表明,SACS高表达降低对奥沙利铂的敏感性。分子对接鉴定出香豆雌酚和槲皮素作为靶向SACS的潜在化合物。SACS通过调控细胞周期通路、免疫微环境和代谢通路促进CRC进展。其可能作为CRC的潜在治疗靶点。
This study aims to identify core genes closely associated with the diagnosis and prognosis of colorectal cancer (CRC) using transcriptome-based meta-analysis approach and machine learning algorithms. Nine CRC datasets from the GEO database were integrated for differential gene expression analysis and WGCNA to identify key genes. Ninety-six combinations of machine learning algorithms were employed to further refine the selection of core genes and validate their diagnostic performance. Functional enrichment, molecular pathways, and associations with the immune microenvironment of core genes were analyzed using GSEA, CIBERSORT, and ssGSEA.
Drug sensitivity predictions were performed to evaluate the impact of core genes on CRC drug response, and molecular docking simulations were used to identify candidate compounds targeting the core genes.
A total of 26 core genes were identified, among which the high expression of the SACS gene was significantly associated with poor prognosis, advanced stage, and specific pathological subtypes in CRC patients. GSEA revealed that high SACS expression prominently activates cell cycle regulatory pathways and immune pathways while suppressing metabolic pathways.
Furthermore, in vitro experiments demonstrated that SACS is highly expressed in CRC cells and that its knockdown significantly inhibits CRC cell proliferation, suggesting its functional role in tumor growth. Immune analysis showed that high SACS expression was positively correlated with activated NK cells but negatively correlated with Tregs and resting NK cells.
Drug sensitivity analysis indicated that high SACS expression reduces sensitivity to oxaliplatin. Molecular docking identified coumestrol and quercetin as potential compounds targeting SACS. SACS promotes CRC progression by regulating cell cycle pathways, the immune microenvironment, and metabolic pathways. And it may serve as a potential therapeutic target for CRC.
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