RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:DOCK3 orchestrates metastasis and immune microenvironment in prostate cancer.
DOCK3 orchestrates metastasis and immune microenvironment in prostate cancer.
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DOCK3 通过细胞骨架动力学驱动 PCa 转移,同时矛盾性地促进免疫活跃的微环境。其肿瘤特异性表达及与侵袭性临床特征的关联,使 DOCK3 成为风险分层的新型生物标志物,以及免疫“冷”PCa 联合免疫治疗的有前景的治疗靶点。
前列腺癌(PCa)是男性癌症死亡的主要原因,转移和免疫逃逸构成重大治疗挑战。DOCK3是一种参与细胞骨架动力学的鸟嘌呤核苷酸交换因子,在前列腺癌中研究甚少。本研究探讨DOCK3在前列腺癌转移和肿瘤免疫微环境(TIME)重塑中的作用。
多组学分析整合了来自 TCGA-PRAD 的 bulk RNA-seq(499 例肿瘤/52 例正常)、来自 GEO 的 scRNA-seq(45,325 个细胞)以及基因组数据。我们进行了:差异表达分析(DESeq2)、免疫解卷积(CIBERSORT、ssGSEA、xCell)、WGCNA 共表达网络、肿瘤突变负荷(TMB)评估、远处转移(M1 vs. M0)关联研究、scRNA-seq 聚类(Harmony/UMAP)和 DE 检验。统计显著性阈值:|log2FC|>1,padj<0.05。
发现DOCK3表达在转移性(M1)肿瘤中较原发性(M0)肿瘤显著升高(p<0.05),并且在转移性样本中与更高的肿瘤突变负荷(TMB)呈强正相关(p<0.001)。细胞特异性分析显示,DOCK3仅在恶性上皮细胞和基质细胞中独家且高度富集,特别是在Cluster 6中,其log2 fold-change为9.13(padj<1e-200),并在54%的细胞中表达,而在所有其他cluster中几乎不存在。在肿瘤微环境中,DOCK3表达升高与细胞毒性免疫浸润显著增加相关,尤其是CD8 + T细胞和Natural Killer细胞,这一发现得到多种计算算法的一致支持(均p<0.05)。在临床上,DOCK3高水平与转移状态显著相关(p<0.01),而CDKN3高表达则与晚期疾病特征相关,包括更高的Gleason评分(3-5)和T-stage(T2-T4)(p<0.01)。此外,在cluster之间观察到免疫浸润模式存在显著差异。通过WGCNA Green Module鉴定的与DOCK3共表达基因的通路富集分析表明,其显著参与细胞骨架重组、肌肉收缩和代谢通路等生物学过程(FDR<0.01)。
Multi-omics analyses integrated bulk RNA-seq from TCGA-PRAD (499 tumors/52 normals), scRNA-seq from GEO (45,325 cells), and genomic data. We performed: Differential expression analysis (DESeq2), Immune deconvolution (CIBERSORT,ssGSEA, xCell), WGCNA co-expression networks, Tumor mutational burden (TMB) assessment, Distant metastasis (M1 vs. M0) association studies, scRNA-seq clustering (Harmony/UMAP) and DE testing. Statistical significance thresholds: |log2FC|>1, padj<0.05.
DOCK3 expression was found to be significantly elevated in metastatic (M1) tumors compared to primary (M0) tumors (p<0.05) and demonstrated a strong positive correlation with a higher tumor mutational burden (TMB) in metastatic samples (p<0.001). Cellular specificity analysis revealed that DOCK3 was exclusively and highly enriched within malignant epithelial and stromal cells, specifically in Cluster 6, where it exhibited a log2 fold-change of 9.13 (padj<1e-200) and was expressed in 54% of cells, compared to a negligible presence in all other clusters. In the tumor microenvironment, elevated DOCK3 expression was associated with a significant increase in cytotoxic immune infiltration, notably of CD8 + T and Natural Killer cells, a finding consistently supported by multiple computational algorithms (all p<0.05). Clinically, a high level of DOCK3 was significantly associated with metastatic status (p<0.01), whereas high expression of CDKN3 was correlated with advanced disease features, including higher Gleason scores (3-5) and T-stage (T2-T4) (p<0.01). Furthermore, significant differences in immune infiltration patterns were observed between clusters. Pathway enrichment analysis of genes co-expressed with DOCK3, identified through the WGCNA Green Module, indicated significant involvement in biological processes such as cytoskeletal reorganization, muscle contraction, and metabolic pathways (FDR<0.01).
DOCK3 drives PCa metastasis through cytoskeletal dynamics while paradoxically promoting an immunologically active microenvironment. Its tumor-specific expression and association with aggressive clinical features nominate DOCK3 as a novel biomarker for risk stratification and a promising therapeutic target for combinatorial immunotherapy in immunologically "cold" PCa.
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