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GPATCH3,一种通过调节 DHX15 的 ATP 酶活性促进肿瘤免疫逃逸的剪接调控因子

英文原题:GPATCH3, a splicing regulator that facilitates tumor immune evasion via the modulation of ATPase activity of DHX15.

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GPATCH3, a splicing regulator that facilitates tumor immune evasion via the modulation of ATPase activity of DHX15.

PubMed 2025/08/11(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

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研究概要

我们的发现表明,GPATCH3 是调控可变剪接和免疫抑制微环境重塑的关键调节因子。通过调节关键免疫基因的剪接保真度并改变其表达,GPATCH3 可能促进免疫逃逸和肿瘤进展。这些结果为 RNA 剪接因子如何与免疫调控相互作用提供了机制性见解,并突出 GPATCH3 作为免疫调节性癌症治疗的潜在治疗靶点。

研究思路结论见上方概要

异常的前体mRNA剪接日益被认为是肿瘤发生和免疫逃逸的关键因素。然而,在肿瘤微环境(TME)中协调剪接动态的调控因子仍未被完全理解。在此,我们鉴定出GPATCH3,一种此前未被表征的含G-patch结构域的蛋白,是癌症中可变剪接和免疫调控的关键调节因子。

我们采用生化研究、剪接报告基因实验和转录组分析来阐明GPATCH3的功能。使用体外和体内模型,包括GPATCH3敲低的细胞系和小鼠异种移植瘤,评估其在肿瘤进展中的作用。基于TCGA转录组数据,使用TIMER2.0分析免疫浸润模式。

GPATCH3与RNA解旋酶DHX15相互作用并增强其ATP酶活性,促进剪接体正确解体。GPATCH3缺失导致剪接改变,包括CXCR3、CD44和FOXP3等免疫调节基因。功能研究显示,GPATCH3缺陷在体内减弱肿瘤生长。相反,GPATCH3表达升高与细胞毒性T细胞和NK细胞浸润减少相关,同时在多种癌症类型中伴有MDSCs和CAFs等免疫抑制群体的富集。转录组分析进一步揭示,GPATCH3缺陷上调CXCL8和LAG3等免疫调节基因,提示其通过剪接调控塑造TME的作用。

展开英文摘要原文

We employed biochemical studies, splicing reporter assays, and transcriptomic analyses to elucidate the function of GPATCH3. In vitro and in vivo models, including GPATCH3-depleted cell lines and mouse xenografts, were used to assess its roles in tumor progression. Immune infiltration patterns were analyzed using TIMER2.0 based on TCGA transcriptomic data.

GPATCH3 interacts with the RNA helicase DHX15 and enhances its ATPase activity, promoting proper spliceosome disassembly. Loss of GPATCH3 led to splicing alterations, including in immunoregulatory genes such as CXCR3 , CD44 , and FOXP3 . Functional studies revealed that GPATCH3 deficiency attenuated tumor growth in vivo . Conversely, elevated GPATCH3 expression was associated with reduced infiltration of cytotoxic T cells and NK cells, alongside an enrichment of immunosuppressive populations such as MDSCs and CAFs across multiple cancer types. Transcriptomic analysis further revealed that GPATCH3 deficiency upregulates immunomodulatory genes such as CXCL8 and LAG3 , suggesting a role in shaping the TME via splicing regulation. DISCUSSION: Our findings suggest GPATCH3 as a critical regulator that governs alternative splicing and immunosuppressive microenvironment remodeling. By modulating the splicing fidelity of key immune genes and altering their expression, GPATCH3 may facilitate immune escape and tumor progression. These results provide mechanistic insights into how RNA splicing factors interface with immune regulation and highlight GPATCH3 as a potential therapeutic target for immunomodulatory cancer therapy.

论文信息

作者
Ren T、Wei G、Yi J、Zhang Y、Zhao H、Wu N、Zhang H、Guo Z
单位
Children's Hospital of Fudan University, National Children's Medical Center, and Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.China
期刊
Frontiers in immunology2025
原文标识
PubMed 40861452 · DOI 10.3389/fimmu.2025.1612461