RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Integrating bulk and single cell sequencing data to identify prognostic biomarkers and drug candidates in HBV associated hepatocellular carcinoma.
Integrating bulk and single cell sequencing data to identify prognostic biomarkers and drug candidates in HBV associated hepatocellular carcinoma.
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乙型肝炎病毒(HBV)感染是肝细胞癌(HCC)的主要驱动因素,然而HBV触发HCC的机制及其与免疫系统的相互作用在很大程度上仍未明确。
在本研究中,共鉴定出53个参与HBV相关HCC进展的免疫相关关键基因。通过分析101种机器学习模型的平均C-index,开发了将逐步Cox回归(向前法)与RSF相结合的最优模型来表征免疫风险指数。高风险组患者表现出更差的生存结局和免疫抑制细胞浸润增加。将PPI分析与机器学习相结合,SPP1、GHR和ESR1成为有前景的可成药靶点,其中SPP1在肿瘤中显著过表达并与不良预后相关。ScRNA-seq分析揭示SPP1主要表达于angio-TAMs中,其可能通过限制T细胞和NK细胞浸润来损害抗肿瘤免疫。它还通过血管生成和EMT通路参与肿瘤进展。药物预测和分子对接鉴定出杨梅素和甲氟喹等小分子化合物,可靶向上述关键免疫基因,从而调节HBV-HCC的免疫格局。重新利用这些已上市药物代表了一种新的治疗途径,为HBV-HCC提供了疗效和加速临床转化的双重优势。
Hepatitis B virus (HBV) infection is a major driver of hepatocellular carcinoma (HCC), yet the mechanisms by which HBV triggers HCC and how it interacts with the immune system remain largely undefined. In this study, 53 immune-related key genes involved in HBV-associated HCC progression were identified. By analyzing the mean C-index of 101 machine learning models, the optimal model-combining stepwise Cox regression (forward) with RSF-was developed to characterize the immune risk index. Patients in the high-risk group exhibited worse survival outcomes and increased infiltration of immunosuppressive cells.
Integrating PPI analysis with machine learning, SPP1, GHR, and ESR1 emerged as promising druggable targets, with SPP1 notably overexpressed in tumors and linked to adverse outcomes. ScRNA-seq analysis revealed SPP1 was predominantly expressed in angio-TAMs, which may impair anti-tumor immunity by limiting T and NK cell infiltration. It also involved in tumor progression via angiogenesis and EMT pathways.
Drug prediction and molecular docking identified small molecules such as myricetin and mefloquine that can target the aforementioned key immune genes, thereby modulating the immune landscape of HBV-HCC. Repurposing these established drugs represents a novel therapeutic avenue, offering both efficacy and expedited clinical translation for HBV-HCC.
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