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新型 CHI3L1 相关血管生成表型界定胶质瘤微环境:来自多组学整合的见解

英文原题:Novel CHI3L1-Associated Angiogenic Phenotypes Define Glioma Microenvironments: Insights From Multi-Omics Integration.

查看英文原题

Novel CHI3L1-Associated Angiogenic Phenotypes Define Glioma Microenvironments: Insights From Multi-Omics Integration.

PubMed 2025/02/24(内容时间) Cancer Sci Q2 · IF 4.9(JCR 2025)

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中文摘要

CHI3L1信号通路显著影响胶质瘤血管生成,但其在肿瘤微环境(TME)中的作用仍不明确。我们通过对多个数据集的bulk和单细胞转录组、基因组学、数字病理学和临床数据进行整合分析,提出了一种新的胶质瘤CHI3L1相关血管表型分类。

我们通过全面的多组学方法研究了这些表型内的生物学特征、基因组改变、治疗脆弱性和免疫特征。我们基于机器学习算法鉴定的CHI3L1相关血管特征(CAVS)构建了血管相关风险(VR)评分。利用无监督共识聚类,胶质瘤被分为三种不同的血管表型:Cluster A,以高血管化和基质激活为特征,TIL(肿瘤浸润淋巴细胞)(TILs)水平相对较低;Cluster B,以中等血管化和基质活性为特征,伴有高密度的TILs;Cluster C,以低血管化和稀疏的免疫细胞浸润为特征。

我们通过单细胞RNA-seq分析观察到,CAVS有效指示了胶质瘤相关血管生成和免疫抑制。此外,高VR评分组表现出增强的血管生成活性、降低的免疫反应、免疫治疗耐药和较差的临床结局。VR评分独立预测胶质瘤预后,并结合列线图提供了稳健的临床决策工具。

我们还基于转录因子对高风险患者进行了潜在药物预测。我们的研究揭示,CHI3L1相关血管表型塑造了胶质瘤中不同的免疫景观,为优化治疗策略以改善患者结局提供了见解。

展开英文摘要原文

The CHI3L1 signaling pathway significantly influences glioma angiogenesis, but its role in the tumor microenvironment (TME) remains elusive.

We propose a novel CHI3L1-associated vascular phenotype classification for glioma through integrative analyses of multiple datasets with bulk and single-cell transcriptome, genomics, digital pathology, and clinical data.

We investigated the biological characteristics, genomic alterations, therapeutic vulnerabilities, and immune profiles within these phenotypes through a comprehensive multi-omics approach.

We constructed the vascular-related risk (VR) score based on CHI3L1-associated vascular signatures (CAVS) identified by machine learning algorithms.

Utilizing unsupervised consensus clustering, gliomas were stratified into three distinct vascular phenotypes: Cluster A, marked by high vascularization and stromal activation with a relatively low levels of tumor-infiltrating lymphocytes (TILs); Cluster B, characterized by moderate vascularization and stromal activity, coupled with a high density of TILs; and Cluster C, defined by low vascularization and sparse immune cell infiltration.

We observed that the CAVS effectively indicated glioma-associated angiogenesis and immune suppression by single-cell RNA-seq analysis.

Moreover, the high-VR-score group exhibited enhanced angiogenic activity, reduced immune response, resistance to immunotherapy, and poorer clinical outcomes. The VR score independently predicted glioma prognosis and, combined with a nomogram, provided a robust clinical decision-making tool. Potential drug prediction based on transcription factors for high-risk patients was also performed.

Our study reveals that CHI3L1-associated vascular phenotypes shape distinct immune landscapes in gliomas, offering insights for optimizing therapeutic strategies to improve patient outcomes.

论文信息

作者
Zhao YH、Cai YX、Pan ZY、Tang F、Ma C、Wang ZF、Li G、Chang H
单位
Brain Glioma Center & Department of Neurosurgery, Zhongnan Hospital of Wuhan University, Wuhan, China.China
期刊
Cancer science2025 May
原文标识
PubMed 39989140 · DOI 10.1111/cas.70028