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基于单细胞分析的 NK 细胞相关基因特征揭示肝细胞癌免疫环境异质性

英文原题:Natural killer (NK) cells-related gene signature reveals the immune environment heterogeneity in hepatocellular carcinoma based on single cell analysis.

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Natural killer (NK) cells-related gene signature reveals the immune environment heterogeneity in hepatocellular carcinoma based on single cell analysis.

PubMed 2024/09/04(内容时间) Discov Oncol Q3 · IF 2.8(JCR 2025)

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中文摘要

肝癌的早期诊断对治疗至关重要,并依赖于多种检测程序的协同使用。早期诊断对于肝细胞癌(HCC)治疗中的精准治疗至关重要。因此,在本研究中,采用NK细胞相关基因预测模型,为基因层面的精准治疗提供依据,并为肝癌患者的治疗提供新的基础。自然杀伤(NK)细胞具有识别和摧毁肿瘤细胞的先天能力,因此作为细胞毒性T细胞的“先天对应物”发挥着关键功能。自然杀伤(NK)细胞被公认为治疗HCC患者中肿瘤免疫治疗的一种前瞻性方法。

在本研究中,我们利用公开可用的数据库收集了HCC患者的scRNA-seq和RNA-seq的生物信息学数据。为了确定基于NK细胞相关基因(NKRGs)的HCC风险特征,我们分离了T细胞和自然杀伤(NK)细胞并对其进行了分析。创建了均匀流形近似与投影图,以展示各标记基因的表达程度以及不同聚类的分布。

进一步分析了免疫治疗反应与基于NKRGs的特征之间的关系,并建立了基于NKRGs的特征。最终,利用该模型和临床特征开发了一个列线图,以精确预测生存可能性。基于NKRGs的预后特征可以准确预测HCC的预后,而对HCC的NKRGs特征的全面表征可能有助于解读HCC对免疫治疗的反应,并提出一种新的肿瘤治疗视角。

展开英文摘要原文

The early diagnosis of liver cancer is crucial for the treatment and depends on the coordinated use of several test procedures. Early diagnosis is crucial for precision therapy in the treatment of the hepatocellular carcinoma (HCC).

Therefore, in this study, the NK cell-related gene prediction model was used to provide the basis for precision therapy at the gene level and a novel basis for the treatment of patients with liver cancer. Natural killer (NK) cells have innate abilities to recognize and destroy tumor cells and thus play a crucial function as the "innate counterpart" of cytotoxic T cells. The natural killer (NK) cells is well recognized as a prospective approach for tumor immunotherapy in treating patients with HCC. In this research, we used publicly available databases to collect bioinformatics data of scRNA-seq and RNA-seq from HCC patients. To determine the NK cell-related genes (NKRGs)-based risk profile for HCC, we isolated T and natural killer (NK) cells and subjected them to analysis.

Uniform Manifold Approximation and Projection plots were created to show the degree of expression of each marker gene and the distribution of distinct clusters. The connection between the immunotherapy response and the NKRGs-based signature was further analyzed, and the NKRGs-based signature was established.

Eventually, a nomogram was developed using the model and clinical features to precisely predict the likelihood of survival. The prognosis of HCC can be accurately predicted using the NKRGs-based prognostic signature, and thorough characterization of the NKRGs signature of HCC may help to interpret the response of HCC to immunotherapy and propose a novel tumor treatment perspective.

论文信息

作者
Ye Z、Li W、Ouyang H、Ruan Z、Liu X、Lin X、Chen X
第一作者单位
Department of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital of Guangdong Medical University, No. 12, Minyou Road, Xiashan District, Zhanjiang, 524000, Guangdong, China.China
通讯作者单位
Department of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital of Guangdong Medical University, No. 12, Minyou Road, Xiashan District, Zhanjiang, 524000, Guangdong, China. chenxuanting012@163.com.China
期刊
Discover oncology2024 Sep 4
原文标识
PubMed 39231877 · DOI 10.1007/s12672-024-01287-4