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识别肺腺癌中缺氧和乳酸代谢联合预后特征

英文原题:Identification of a combined hypoxia and lactate metabolism prognostic signature in lung adenocarcinoma.

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Identification of a combined hypoxia and lactate metabolism prognostic signature in lung adenocarcinoma.

PubMed 2024/07/04(内容时间) BMC Pulm Med Q2 · IF 3.1(JCR 2025)

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研究概要

该预后模型整合了乳酸代谢和缺氧参数,为 LUAD 患者的生存、免疫细胞浸润和功能以及治疗反应性提供预测见解。该模型可能有助于个性化治疗策略,根据每位患者疾病的独特分子特征定制干预措施。

研究思路结论见上方概要

在肿瘤微环境(TME)中,缺氧与乳酸代谢之间存在双向关系,各组分相互影响,形成密不可分的联系。本研究的目的是通过整合与缺氧和乳酸代谢相关的基因,构建一个预后模型。该模型旨在作为预测肺腺癌(LUAD)患者结局的工具,包括生存率、免疫微环境状态以及治疗反应性。

针对LUAD的转录组测序数据和患者临床信息取自The Cancer Genome Atlas(TCGA)和Gene Expression Omnibus(GEO)综合数据库。从一系列可获取的数据集中汇编了与缺氧和乳酸代谢相关的基因集。采用单因素和多因素Cox回归分析。其他研究步骤包括肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)、功能富集评估以及ESTIMATE、CIBERSORT和TIDE算法,用于评估药物敏感性和预测免疫治疗疗效。

建立了一个包含五个乳酸和缺氧相关基因(LHRGs)PKFP、SLC2A1、BCAN、CDKN3和ANLN的新型预后特征。该模型表明,LHRG相关风险评分升高的LUAD患者生存率显著降低。单因素和多因素Cox分析均证实,风险评分是总生存期的稳健预后指标。免疫表型分析显示,与低风险组相比,高风险组患者中记忆CD4 + T细胞、树突状细胞和NK细胞的浸润增加。高风险组中肺腺癌驱动基因突变概率更高,且MSI与风险评分相关。功能富集分析表明,高风险组以细胞周期相关通路为主,而低风险组以代谢通路更为普遍。此外,药物敏感性分析显示,高风险组对多种药物的敏感性增加,尤其是PI3K-AKT、EGFR和ELK通路的抑制剂。

展开英文摘要原文

In the tumor microenvironment (TME), a bidirectional relationship exists between hypoxia and lactate metabolism, with each component exerting a reciprocal influence on the other, forming an inextricable link. The aim of the present investigation was to develop a prognostic model by amalgamating genes associated with hypoxia and lactate metabolism. This model is intended to serve as a tool for predicting patient outcomes, including survival rates, the status of the immune microenvironment, and responsiveness to therapy in patients with lung adenocarcinoma (LUAD).

Transcriptomic sequencing data and patient clinical information specific to LUAD were obtained from comprehensive repositories of The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). A compendium of genes implicated in hypoxia and lactate metabolism was assembled from an array of accessible datasets. Univariate and multivariate Cox regression analyses were employed. Additional investigative procedures, including tumor mutational load (TMB), microsatellite instability (MSI), functional enrichment assessments and the ESTIMATE, CIBERSORT, and TIDE algorithms, were used to evaluate drug sensitivity and predict the efficacy of immune-based therapies.

A novel prognostic signature comprising five lactate and hypoxia-related genes (LHRGs), PKFP, SLC2A1, BCAN, CDKN3, and ANLN, was established. This model demonstrated that LUAD patients with elevated LHRG-related risk scores exhibited significantly reduced survival rates. Both univariate and multivariate Cox analyses confirmed that the risk score was a robust prognostic indicator of overall survival. Immunophenotyping revealed increased infiltration of memory CD4 + T cells, dendritic cells and NK cells in patients classified within the high-risk category compared to their low-risk counterparts. Higher probability of mutations in lung adenocarcinoma driver genes in high-risk groups, and the MSI was associated with the risk-score. Functional enrichment analyses indicated a predominance of cell cycle-related pathways in the high-risk group, whereas metabolic pathways were more prevalent in the low-risk group. Moreover, drug sensitivity analyses revealed increased sensitivity to a variety of drugs in the high-risk group, especially inhibitors of the PI3K-AKT, EGFR, and ELK pathways.

This prognostic model integrates lactate metabolism and hypoxia parameters, offering predictive insights regarding survival, immune cell infiltration and functionality, as well as therapeutic responsiveness in LUAD patients. This model may facilitate personalized treatment strategies, tailoring interventions to the unique molecular profile of each patient's disease.

论文信息

作者
Sun J、Jiang R、Hou L、Wang L、Li M、Dong H、Dong N、Lin Y
第一作者单位
Department of Thoracic Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, China.China
通讯作者单位
Department of Thoracic Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, China. yanpeng_zhang@xjtu.edu.cn.China
期刊
BMC pulmonary medicine2024 Jul 4
原文标识
PubMed 38965505 · DOI 10.1186/s12890-024-03132-4