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失巢凋亡抵抗调控透明细胞肾细胞癌的免疫浸润和药物敏感性:来自多组学、单细胞分析和体外实验的见解

英文原题:Anoikis resistance regulates immune infiltration and drug sensitivity in clear-cell renal cell carcinoma: insights from multi omics, single cell analysis and in vitro experiment.

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Anoikis resistance regulates immune infiltration and drug sensitivity in clear-cell renal cell carcinoma: insights from multi omics, single cell analysis and in vitro experiment.

PubMed 2024/06/17(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

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研究概要

本研究建立了一种新的失巢凋亡抵抗基因特征,可预测 ccRCC 的生存和免疫治疗反应,提示通过调控这些 ARGs 来改变免疫环境可能改善 ccRCC 的治疗策略和预后评估。

研究思路结论见上方概要

失巢凋亡是一种程序性细胞死亡形式,对于防止癌症转移至关重要。在一些实体癌中,失巢凋亡抵抗可促进肿瘤进展。然而,这一现象在透明细胞肾细胞癌(ccRCC)中尚未得到充分研究。

我们利用SVM机器学习从ccRCC患者转录组数据中识别出核心失巢凋亡相关基因(ARGs)。通过LASSO Cox回归模型将患者分为风险组,构建预后模型。GSVA和ssGSEA评估免疫浸润,单细胞分析检测ARG在不同免疫细胞中的表达。定量PCR和免疫组化验证了ccRCC免疫治疗应答者与无应答者之间ARG表达的差异。

CCND1、CDKN3、PLK1和BID等ARGs在预测ccRCC预后中起关键作用,将较高风险与Treg浸润增加和M1巨噬细胞存在减少联系起来,表明失巢凋亡抵抗促进了免疫抑制环境。单细胞见解显示ARGs在Tregs和树突状细胞中富集,影响免疫检查点。免疫组化分析揭示,在对免疫治疗有反应的ccRCC组织中,ARGs蛋白表达显著升高。

展开英文摘要原文

Anoikis is a form of programmed cell death essential for preventing cancer metastasis. In some solid cancer, anoikis resistance can facilitate tumor progression. However, this phenomenon is underexplored in clear-cell renal cell carcinoma (ccRCC).

Using SVM machine learning, we identified core anoikis-related genes (ARGs) from ccRCC patient transcriptomic data. A LASSO Cox regression model stratified patients into risk groups, informing a prognostic model. GSVA and ssGSEA assessed immune infiltration, and single-cell analysis examined ARG expression across immune cells. Quantitative PCR and immunohistochemistry validated ARG expression differences between immune therapy responders and non-responders in ccRCC.

ARGs such as CCND1, CDKN3, PLK1, and BID were key in predicting ccRCC outcomes, linking higher risk with increased Treg infiltration and reduced M1 macrophage presence, indicating an immunosuppressive environment facilitated by anoikis resistance. Single-cell insights showed ARG enrichment in Tregs and dendritic cells, affecting immune checkpoints. Immunohistochemical analysis reveals that ARGs protein expression is markedly elevated in ccRCC tissues responsive to immunotherapy.

This study establishes a novel anoikis resistance gene signature that predicts survival and immunotherapy response in ccRCC, suggesting that manipulating the immune environment through these ARGs could improve therapeutic strategies and prognostication in ccRCC.

论文信息

作者
Wen X、Hou J、Qi T、Cheng X、Liao G、Fang S、Xiao S、Qiu L
第一作者单位
The Department of Surgery, Shenzhen Longgang Second People's Hospital, Shenzhen, China.China
通讯作者单位
Department of Urology, Lianshui People's Hospital of Kangda College Affiliated to Nanjing Medical University, Huaian, China.China
期刊
Frontiers in immunology2024
原文标识
PubMed 38953023 · DOI 10.3389/fimmu.2024.1427475