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宫颈癌中的免疫细胞浸润与预后指数:来自代谢相关差异基因的见解

英文原题:Immune cell infiltration and prognostic index in cervical cancer: insights from metabolism-related differential genes.

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Immune cell infiltration and prognostic index in cervical cancer: insights from metabolism-related differential genes.

PubMed 2024/05/22(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

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研究概要

本研究旨在开发一个基于线粒体代谢相关差异基因的预后指数,用于预测宫颈癌患者的预后。该预后指数与 TIDE 和 TMB 分析相结合,可揭示免疫细胞浸润格局,以及免疫治疗和靶向治疗的潜在疗效。我们的分析表明,铁硫簇组装酶(ISCU)基因有望成为宫颈癌免疫治疗的生物标志物。

研究思路结论见上方概要

宫颈癌在中美两国仍是重要的妇科恶性肿瘤,因其高发病率和死亡率对女性生命健康构成重大威胁。能量代谢改变和线粒体功能失调在恶性肿瘤的发生、生长、转移和复发中发挥关键作用。本研究旨在基于线粒体代谢相关差异基因,预测宫颈癌患者的预后并评估抗肿瘤治疗疗效。

从TCGA和GEO数据库获取宫颈癌患者的转录组数据和临床资料。通过GO、KEGG和GSEA分析鉴定差异基因相关细胞通路。使用LASSO回归分析构建预后指数。采用CIBERSORT和ssGSEA评估免疫细胞浸润,并检测免疫检查点抑制剂基因与差异基因之间的相关性。利用TCGA数据库的核苷酸变异数据分析肿瘤突变负荷(TMB)及其与预后指数的关联。分别使用TIDE算法和oncoPredic算法确定患者对免疫治疗的应答和对 antitumor 药物的敏感性。

基于代谢相关差异基因构建了一个预后指数,用于预测宫颈癌患者的临床结局,并将其分为两个不同的亚型。该预后指数是不良预后的独立危险因素。高指数组总体预后显著较差,同时肿瘤突变负荷(TMB)升高、免疫细胞浸润增加、TIDE评分较低,提示可能从免疫治疗中获益。相反,低指数组对代谢相关抗肿瘤药物,特别是多激酶抑制剂,表现出更高的敏感性。

展开英文摘要原文

Cervical cancer remains a significant gynecologic malignancy in both China and the United States, posing a substantial threat to women's lives and health due to its high morbidity and mortality rates. Altered energy metabolism and dysregulated mitochondrial function play crucial roles in the development, growth, metastasis, and recurrence of malignant tumors. In this study, we aimed to predict prognosis and assess efficacy of anti-tumor therapy in cervical cancer patients based on differential genes associated with mitochondrial metabolism.

Transcriptomic data and clinical profiles of cervical cancer patients were retrieved from the TCGA and GEO databases. Differential gene-related cellular pathways were identified through GO, KEGG, and GSEA analyses. Prognostic indices were constructed using LASSO regression analysis. Immune cell infiltration was assessed using CIBERSORT and ssGSEA, and the correlation between immune checkpoint inhibitor genes and differential genes was examined. Tumor mutation load (TMB) and its association with prognostic indices were analyzed using nucleotide variant data from the TCGA database. Patient response to immunotherapy and sensitivity to antitumor drugs were determined using the TIDE algorithm and the oncoPredic algorithm, respectively.

A prognostic index based on metabolism-related differential genes was developed to predict the clinical outcome of cervical cancer patients, enabling their classification into two distinct subtypes. The prognostic index emerged as an independent risk factor for unfavorable prognosis. The high-index group exhibited a significantly worse overall prognosis, along with elevated tumor mutation burden (TMB), increased immune cell infiltration, and lower TIDE scores, indicating a potential benefit from immunotherapy. Conversely, the low-index group demonstrated increased sensitivity to metabolism-related antitumor agents, specifically multikinase inhibitors.

The aim of this study was to develop a prognostic index based on differential genes associated with mitochondrial metabolism, which could be used to predict cervical cancer patients' prognoses. When combined with TIDE and TMB analyses, this prognostic index offers insights into the immune cell infiltration landscape, as well as the potential efficacy of immunotherapy and targeted therapy. Our analysis suggests that the Iron-Sulfur Cluster Assembly Enzyme (ISCU) gene holds promise as a biomarker for cervical cancer immunotherapy.

论文信息

作者
Ma B、Ren C、Yin Y、Zhao S、Li J、Yang H
单位
Department of Obstetrics and Gynecology, Xijing Hospital, Air Force Medical University, Shaanxi, Xi'an, China.China
文献类型
非美国政府资助研究
期刊
Frontiers in immunology2024
原文标识
PubMed 38840928 · DOI 10.3389/fimmu.2024.1411132