CAR-T(CAR-T)细胞疗法在非肿瘤性疾病中的应用
Chimeric antigen receptor T (CAR-T) cell therapy in non-oncological diseases.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:PrCRS: a prediction model of severe CRS in CAR-T therapy based on transfer learning.
PrCRS: a prediction model of severe CRS in CAR-T therapy based on transfer learning.
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基于我们的研究结果,PrCRS 能够有效预测患者发生重度 CRS 的可能性及发生时间,从而有助于快速、精准地评估患者,为医学研究做出重要贡献。目前应用深度学习算法预测 CRS 的研究很少,我们的研究填补了这一空白,使我们的研究更具新颖性和意义。我们的代码已在 https://github.com/wzy38828201/PrCRS 公开。我们的预测平台网站为:http://prediction.unicar-therapy.com/index-en.html。
CAR-T 细胞疗法是治疗血液系统恶性肿瘤和实体瘤的一种新方法。然而,其应用伴随着一种可能危及生命的不良事件的出现,即细胞因子释放综合征(CRS)。鉴于接受 CAR-T 治疗的患者数量不断增加,迫切需要开发预测重度 CRS 发生的模型,以便提前预防。目前,所有现有模型均基于决策树,其准确性远未达到我们的预期,且缺乏能够更准确预测重度 CRS 发生的深度学习模型。
我们提出了 PrCRS,一种基于 U-net 和 Transformer 的深度学习预测模型。鉴于 CAR-T 患者数据有限,我们利用 COVID-19 患者数据进行迁移学习。综合评估表明,PrCRS 模型在预测 CRS 发生方面优于其他最先进的方法。我们提出了六个模型,用于提前一天、两天和三天预测患者发生重度 CRS 的概率。此外,我们提出了一种将模型输出转换为重度 CRS 实际概率的策略,并提供相应的预测结果。
CAR-T cell therapy represents a novel approach for the treatment of hematologic malignancies and solid tumors. However, its implementation is accompanied by the emergence of potentially life-threatening adverse events known as cytokine release syndrome (CRS). Given the escalating number of patients undergoing CAR-T therapy, there is an urgent need to develop predictive models for severe CRS occurrence to prevent it in advance. Currently, all existing models are based on decision trees whose accuracy is far from meeting our expectations, and there is a lack of deep learning models to predict the occurrence of severe CRS more accurately.
We propose PrCRS, a deep learning prediction model based on U-net and Transformer. Given the limited data available for CAR-T patients, we employ transfer learning using data from COVID-19 patients. The comprehensive evaluation demonstrates the superiority of the PrCRS model over other state-of-the-art methods for predicting CRS occurrence. We propose six models to forecast the probability of severe CRS for patients with one, two, and three days in advance. Additionally, we present a strategy to convert the model's output into actual probabilities of severe CRS and provide corresponding predictions.
Based on our findings, PrCRS effectively predicts both the likelihood and timing of severe CRS in patients, thereby facilitating expedited and precise patient assessment, thus making a significant contribution to medical research. There is little research on applying deep learning algorithms to predict CRS, and our study fills this gap. This makes our research more novel and significant. Our code is publicly available at https://github.com/wzy38828201/PrCRS . The website of our prediction platform is: http://prediction.unicar-therapy.com/index-en.html .
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