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基于中性粒细胞相关基因预测肺鳞状细胞癌的预后特征揭示免疫景观和候选药物

英文原题:Prediction of Prognostic Features Based on Neutrophil-Related Genes for Lung Squamous Cell Carcinoma Reveals Immune Landscape and Drug Candidates.

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Prediction of Prognostic Features Based on Neutrophil-Related Genes for Lung Squamous Cell Carcinoma Reveals Immune Landscape and Drug Candidates.

PubMed 2024/01/01(内容时间) Rev Invest Clin Q2 · IF 2(JCR 2025)

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中文摘要

由于肺鳞状细胞癌的预后普遍较差,迫切需要创新新的预后生物标志物和治疗靶点以改善患者结局。

我们的目标是开发一种与中性粒细胞相关的新型多基因预后模型,用于预测肺鳞状细胞癌的预后。

我们利用了癌症基因组图谱数据库中肺鳞状细胞癌患者的信使RNA表达谱和相关临床数据。通过K-means聚类、最小绝对收缩和选择算子回归以及单因素/多因素Cox回归分析,我们识别出12个与患者生存密切相关的中性粒细胞相关基因,并构建了一个预后模型。我们在癌症基因组图谱数据库和基因表达综合验证集中验证了该模型的稳定性,证明了该模型具有稳健的预测性能。

免疫浸润分析显示,与低风险组相比,高风险组中静息NK 细胞和单核细胞的浸润水平显著升高,而高风险组中巨噬细胞的浸润水平显著降低。大多数免疫检查点基因,包括程序性细胞死亡蛋白1和细胞毒性T淋巴细胞相关抗原4,在高风险组中表现出高表达水平。肿瘤免疫功能障碍和排斥评分以及免疫表型评分结果表明,“RIC”版本V2修订的高风险组可能倾向于免疫治疗。此外,CellMiner数据库的预测结果显示,药物敏感性(如长春瑞滨和PKI-587)与预后基因之间存在很强的相关性。

总体而言,我们的研究建立了一个可靠的预后风险模型,该模型在预测肺鳞状细胞癌患者的总生存期方面具有重要价值,并可能指导个性化治疗策略。(Rev Invest Clin. 2024;76(2):116-31)。

展开英文摘要原文

Background: Since to the prognosis of lung squamous cell carcinoma is generally poor, there is an urgent need to innovate new prognostic biomarkers and therapeutic targets to improve patient outcomes. Objectives: Our goal was to develop a novel multi-gene prognostic model linked to neutrophils for predicting lung squamous cell carcinoma prognosis.

Methods: We utilized messenger RNA expression profiles and relevant clinical data of lung squamous cell carcinoma patients from the Cancer Genome Atlas database. Through K-means clustering, least absolute shrinkage and selection operator regression, and univariate/multivariate Cox regression analyses, we identified 12 neutrophil-related genes strongly related to patient survival and constructed a prognostic model.

We verified the stability of the model in the Cancer Genome Atlas database and gene expression omnibus validation set, demonstrating the robust predictive performance of the model. Results: Immunoinfiltration analysis revealed remarkably elevated levels of infiltration for natural killer cells resting and monocytes in the high-risk group compared to the low-risk group, while macrophages had considerably lower infiltration in the high risk group.

Most immune checkpoint genes, including programmed cell death protein 1 and cytotoxic T-lymphocyte-associated antigen 4, exhibited high expression levels in the high risk group. Tumor immune dysfunction and exclusion scores and immunophenoscore results suggested a potential inclination toward immunotherapy in the "RIC" version V2 revised high risk group.

Moreover, prediction results from the CellMiner database revealed great correlations between drug sensitivity (e. g. , Vinorelbine and PKI-587) and prognostic genes. Conclusion: Overall, our study established a reliable prognostic risk model that possessed significant value in predicting the overall survival of lung squamous cell carcinoma patients and may guide personalized treatment strategies. (Rev Invest Clin. 2024;76(2):116-31).

论文信息

作者
Sili D、Nan Z
第一作者单位
Thoracic Surgery, Haining Hospital of Traditional Chinese Medicine, Haining, Zhejiang.China
通讯作者单位
Medical Oncology, China Coast Guard Hospital of the People's Armed Police Force, Jiaxing, Zhejiang, China.China
期刊
Revista de investigacion clinica; organo del Hospital de Enfermedades de la Nutricion2024
原文标识
PubMed 38740381 · DOI 10.24875/RIC.23000262