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使用多方向 2D 投影先验改进全身 3D 扫描中的自动肿瘤分割

英文原题:Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors.

查看英文原题

Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors.

PubMed 2024/02/15(内容时间) Heliyon

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中文摘要

早期癌症检测在全身体成像引导下对患者的总体生存和健康状况至关重要。尽管已开发出多种计算机辅助系统来加速和增强癌症诊断及纵向监测,但肿瘤的检测和分割,尤其是来自全身扫描的肿瘤,仍然具有挑战性。为解决这一问题,我们提出了一种新颖的端到端自动化框架,该框架首先生成肿瘤概率分布图(TPDM),其中融合了关于肿瘤特征(如大小、形状、位置)的先验信息。随后,将TPDM与最先进的3D分割网络以及原始PET/CT或PET/MR图像相结合。与仅使用基线3D分割网络相比,这旨在产生更有意义的肿瘤分割掩膜。所提出的方法在三个独立队列(autoPET、CAR-T、cHL)上进行了评估,这些队列包含不同癌症形式的图像,采用不同的成像模态和采集参数获得,并由不同的专家标注病灶。评估表明,我们提出的方法在Dice系数以及病灶级灵敏度和精确度方面以显著优势优于基线模型。许多极小的肿瘤病灶(即最难分割的)被基线模型遗漏,但被所提出的模型检测到,且未产生额外的假阳性,从而得出更具临床相关性的评估结果。平均而言,总体Dice分别提高了0.0251(autoPET)、0.144(CAR-T)和0.0528(cHL)。

总之,所提出的基于TPDM的方法可与任何最先进的3D UNET集成,有望获得更准确和稳健的分割结果。

展开英文摘要原文

Early cancer detection, guided by whole-body imaging, is important for the overall survival and well-being of the patients. While various computer-assisted systems have been developed to expedite and enhance cancer diagnostics and longitudinal monitoring, the detection and segmentation of tumors, especially from whole-body scans, remain challenging. To address this, we propose a novel end-to-end automated framework that first generates a tumor probability distribution map (TPDM), incorporating prior information about the tumor characteristics (e. g. size, shape, location). Subsequently, the TPDM is integrated with a state-of-the-art 3D segmentation network along with the original PET/CT or PET/MR images. This aims to produce more meaningful tumor segmentation masks compared to using the baseline 3D segmentation network alone.

The proposed method was evaluated on three independent cohorts (autoPET, CAR-T, cHL) of images containing different cancer forms, obtained with different imaging modalities, and acquisition parameters and lesions annotated by different experts. The evaluation demonstrated the superiority of our proposed method over the baseline model by significant margins in terms of Dice coefficient, and lesion-wise sensitivity and precision.

Many of the extremely small tumor lesions (i. e. the most difficult to segment) were missed by the baseline model but detected by the proposed model without additional false positives, resulting in clinically more relevant assessments. On average, an improvement of 0. 0251 (autoPET), 0. 144 (CAR-T), and 0. 0528 (cHL) in overall Dice was observed.

In conclusion, the proposed TPDM-based approach can be integrated with any state-of-the-art 3D UNET with potentially more accurate and robust segmentation results.

论文信息

作者
Tarai S、Lundström E、Sjöholm T、Jönsson H、Korenyushkin A、Ahmad N、Pedersen MA、Molin D
单位
Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.Sweden
期刊
Heliyon2024 Feb 29
原文标识
PubMed 38390107 · DOI 10.1016/j.heliyon.2024.e26414