← 返回

HIF-1A 作为与宫颈癌侵袭、迁移和免疫抑制相关的预后生物标志物

英文原题:HIF-1A as a prognostic biomarker related to invasion, migration and immunosuppression of cervical cancer.

查看英文原题

HIF-1A as a prognostic biomarker related to invasion, migration and immunosuppression of cervical cancer.

PubMed 2024/01/13(内容时间) Heliyon

分数与星级只用于站内排序 —— 不代表疗效、安全性或个人适用性。

研究概要

通过生物信息学分析与实验验证相结合的方法,确定了 HIF-1A 在宫颈癌中的作用。识别了可能参与 HIF-1A 肿瘤发生机制的基因。这些发现有可能增强我们对宫颈癌进展的理解,并为其临床管理提供有前景的治疗靶点。

研究思路结论见上方概要

宫颈癌的发病率在女性恶性肿瘤中位居第二,对女性的生活质量和整体健康产生重大影响。缺氧微环境在肿瘤发生和发展中起着关键作用。本研究旨在探讨宫颈癌中与缺氧诱导因子(HIF-1A)相关的基本基因和通路,以确定潜在的诊断和治疗下游靶点。

我们从综合基因表达数据库(GEO)中获取了数据集GSE63514。该数据集包含正常组24例患者和肿瘤组28例患者。采用基因集差异分析(GSVA)和基因集富集分析(GSEA)来识别与HIF-1A表达相关的基因及所涉及的特异性信号通路。在TCGA数据集中检验了HIF-1A与肿瘤免疫浸润之间的关联。构建WGCAN网络以识别蓝色模块中的关键基因,随后进行基因本体(GO)功能和京都基因与基因组百科全书(KEGG)通路富集分析,以确定与HIF-1A相关的通路和功能注释。同时从STRING数据库获取HIF-1A基因的蛋白质相互作用网络,并使用Cytoscape进行可视化。在体内验证了HIF-1A的功能及其相关基因的表达。

HIF-1A在宫颈癌患者的单因素和多因素Cox回归分析中均为危险因素。通过相关性分析,共鉴定出344个与HIF-1A表达显著相关的基因,并获得了相关性最强的基因。HIF-1A参与的主要信号通路包括TNF-α/NF-κB、PI3K/AKT/MTOR、TGF-β、JAK-STAT以及其他多种信号级联。经qRT-PCR验证,我们确定整合素β-1(ITGB1)、C-C基序趋化因子配体2(CCL2)、striatin 3(STRN3)和内皮素-1(EDN1)是受HIF-1A影响的关键下游基因。HIF-1A与自然杀伤(NK)细胞、肥大细胞、CD4+ T细胞、M0巨噬细胞、中性粒细胞、滤泡辅助性T细胞、CD8+ T细胞和调节性T细胞(Treg)的免疫浸润相关。HIF-1A与化疗药物敏感性相关。HIF-1A通路及其功能的鉴定主要集中在细胞质翻译、有氧呼吸、细胞呼吸、氧化磷酸化、产热等方面。体内实验结果证实,HIF-1A在促进宫颈癌细胞迁移和侵袭中发挥关键作用。此外,HIF-1A的过表达导致ITGB1、CCL2、STRN3和EDN1的表达上调。

展开英文摘要原文

The incidence of cervical cancer ranks second among malignant tumors in women, exerting a significant impact on their quality of life and overall well-being. The hypoxic microenvironment plays a pivotal role in the initiation and progression of tumorigenesis. The present study aims to investigate the fundamental genes and pathways associated with the hypoxia-inducible factor (HIF-1A) in cervical cancer, aiming to identify potential downstream targets for diagnostic and therapeutic purposes.

We obtained dataset GSE63514 from the Comprehensive Gene Expression Database (GEO). The dataset comprised of 24 patients in the normal group and 28 patients in the tumor group. Gene set difference analysis (GSVA) and gene set enrichment analysis (GSEA) were used to identify the genes related to HIF-1A expression and the specific signaling pathways involved.The association between HIF-1A and tumor immune infiltration was examined in the TCGA dataset. The WGCAN network was constructed to identify key genes within the blue module, and subsequent gene ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were conducted to determine the pathways and functional annotations associated with HIF-1A. The protein interaction network of the HIF-1A gene was obtained from the STRING database and visualized using Cytoscape in the meantime.The function of HIF-1A and its related gene expression were verified in vivo.

HIF-1A was a risk factor in both univariate and multivariate Cox regression analysis of cervical cancer patients. A total of 344 genes significantly correlated with the expression of HIF-1A were identified through correlation analysis, and the genes exhibiting the strongest correlation were obtained. The major signaling pathways involved in HIF-1A encompass TNF-α/NF-κB, PI3K/AKT/MTOR, TGF-β, JAK-STAT, and various other signaling cascades. Reinforced by qRT-PCR, we identified Integrin beta-1 (ITGB1), C-C motif chemokine ligand 2 (CCL2), striatin 3 (STRN3), and endothelin-1 (EDN1) as pivotal downstream genes influenced by HIF-1A. HIF-1A is associated with immune infiltration of natural killer (NK) cells, mast cells, CD4 + T cells, M0 macrophages, neutrophils, follicular helper T cells, CD8 + T cells, and regulatory T cells (Treg). HIF-1A is associated with sensitivity to chemotherapy drugs. The identification of the HIF-1A pathway and its function primarily focuses on cytoplasmic translation, aerobic respiration, cellular respiration, oxidative phosphorylation, thermogenesis, among others. The results of in vivo experiments have confirmed that HIF-1A plays a crucial role in promoting the migration and invasion of cervical cancer cells. Moreover, the overexpression of HIF-1A led to an upregulation in the expressions of ITGB1, CCL2, STRN3, and EDN1.

The role of HIF-1A in cervical cancer was determined through a combination of bioinformatics analysis and experimental validation. The genes potentially implicated in the tumorigenesis mechanism of HIF-1A were identified. These findings has the potential to enhance our comprehension of the progression of cervical cancer and offer promising therapeutic targets for its clinical management.

论文信息

作者
Li Z、Wei R、Yao S、Meng F、Kong L
单位
Department of Anesthesiology, the First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.China
期刊
Heliyon2024 Jan 30
原文标识
PubMed 38298716 · DOI 10.1016/j.heliyon.2024.e24664