RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Tumor microenvironment heterogeneity in bladder cancer identifies biologically distinct subtypes predicting prognosis and anti-PD-L1 responses.
Tumor microenvironment heterogeneity in bladder cancer identifies biologically distinct subtypes predicting prognosis and anti-PD-L1 responses.
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膀胱癌(BCa)在肿瘤微环境(TME)中具有异质性。然而,TME在BCa中调节免疫治疗反应的作用尚未被充分探索。因此,我们使用CIBERSORTx分析了免疫细胞比例,并将BCa聚类为不同亚型。
我们还分析了加权相关网络,以生成免疫治疗相关枢纽基因,并利用多因素Cox和LASSO回归分析构建预测模型。我们发现BCa包含三种亚型(C1‒C3)。在三种亚型中,C1亚型患者的预后最好,对抗程序性死亡配体1(PD-L1)的缓解率最高。CD8+、CD4+记忆活化T细胞、滤泡辅助T细胞、活化NK细胞和M1巨噬细胞等免疫细胞浸润C1亚型。C2亚型富含M0巨噬细胞和活化肥大细胞,C3亚型富含B细胞和静息免疫细胞。在机制上,C1和C2亚型增强的免疫原性与更高的缓解率呈正相关,而C2亚型中失调的ECM相关通路以及C3亚型中的糖酵解和脂肪酸代谢通路损害了患者对抗PD-L1治疗的反应。
我们还基于18个基因构建了一个TME相关特征,该特征在总生存期方面表现良好。总之,我们通过分析BCa中TME异质性确定了预后和抗PD-L1反应。
Bladder cancer (BCa) is heterogeneous in the tumour microenvironment (TME).
However, the role of the TME in BCa in modulating the response to immunotherapy has not been fully explored.
We therefore analysed fractions of immune cells using CIBERSORTx and clustered BCa into subtypes.
We also analyzed weighted correlation networks to generate immunotherapy-related hub genes that we used to construct a prediction model using multivariate Cox and LASSO regression analyses.
We found that BCa comprised three subtypes (C1‒C3). The prognosis of the patients was the most favourable and the response rate to anti-programmed death ligand 1 (PD-L1) was the highest in C1 among the three subtypes. Immune cells, including CD8 + , CD4 + memory activated, and follicular helper T cells, activated NK cells, and M1 macrophages infiltrated the C1 subtype. The C2 subtype was enriched in M0 macrophages and activated mast cells, and the C3 subtype was enriched in B and resting immune cells.
Mechanistically, the enhanced immunogenicity of subtypes C1 and C2 correlated positively with a higher response rate, whereas the dysregulated ECM-related pathways in the C2 subtype and glycolytic and fatty acid metabolic pathways in the C3 subtype impaired the responses of patients to anti-PD-L1 therapy.
We also constructed a TME-related signature based on 18 genes that performed well in terms of overall survival.
In conclusion, we determined prognoses and anti-PD-L1 responses by analysing TME heterogeneity in BCa.
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