RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Integrated analysis of histone lysine lactylation (Kla)-specific genes suggests that NR6A1, OSBP2 and UNC119B are novel therapeutic targets for hepatocellular carcinoma.
Integrated analysis of histone lysine lactylation (Kla)-specific genes suggests that NR6A1, OSBP2 and UNC119B are novel therapeutic targets for hepatocellular carcinoma.
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组蛋白赖氨酸乳酰化(Kla)在肝细胞癌(HCC)发生中发挥重要作用。因此,本研究聚焦Kla特异性基因以筛选新治疗靶点。研究从TCGA数据中鉴定差异表达Kla特异性基因(DEKlaG),筛选标准为|log2倍数变化|>2且P<0.05,并评估其预后价值。研究还进一步分析乳酸积累与预后相关DEKlaG表达之间的关系,并考察Kla活化在免疫微环境、免疫治疗和药物耐药中的作用。通过基因集富集分析(GSEA)预测Kla影响的通路,并在ICGC和GEO数据库验证Cox模型的预测能力。共鉴定出129个DEKlaG,其中32个分子可能是预后生物标志物。研究构建了包含ARHGEF37、MTFR2、NR6A1、NT5DC2、OSBP2、RNASEH2A、SFN和UNC119B的Cox模型;高风险评分组总生存期较差,且风险评分可提示肿瘤体积大、病理分级差和分期晚。NR6A1、OSBP2和UNC119B可能抑制HCC中的NK细胞及TIL浸润,并损害I型和II型干扰素应答,从而导致预后不良和免疫治疗耐药。OSBP2和UNC119B与化疗耐药相关。GSEA显示WNT、mTOR、MAPK和NOTCH信号通路活化,提示这些通路可能在Kla过程中发挥关键作用。
此外,研究显示NR6A1和OSBP2在GEO队列中过表达;在ICGC队列中,OSBP2和UNC119B与生存较差和晚期分期相关。
总之,组蛋白Kla与HCC预后有关,可能作为独立生物标志物。NR6A1、OSBP2和UNC119B与预后、免疫治疗和化疗耐药相关,可能是HCC新的候选治疗靶点。
Histone lysine lactylation (Kla) plays a vital role in the tumorigenesis of hepatocellular carcinoma (HCC). Hence, we focused on Kla-specific genes to select novel therapeutic targets. Differentially expressed Kla-specific genes (DEKlaGs) were identified from TCGA with the cut-off criteria |log 2 (FlodChange (FC))| > 2, p-value < 0.
05, following investigating the prognostic value. The correlation between lactate accumulation and prognostic DEKlaGs expression was further investigated. On the other hand, we explored the roles of Kla activation in the immune microenvironment, immunotherapy, and drug resistance.
We conducted gene set enrichment analysis (GSEA) to predict the pathways influenced by Kla. The predictive power of Cox model was further identified in ICGC and GEO databases. A total of 129 DEKlaGs were identified, and 32 molecules might be potential prognostic biomarkers. A Cox model including ARHGEF37, MTFR2, NR6A1, NT5DC2, OSBP2, RNASEH2A, SFN, and UNC119B was constructed, which suggested unfavorable overall survival in high-risk score group, and risk score could serve as an indicator for large tumor size, poor pathological grade and advanced stage. NR6A1, OSBP2 and UNC119B could inhibit NK cell as well as TIL cell infiltration, and impair Type-I and II IFN responses in HCC, thereby contributing to unsatisfactory prognosis and immunotherapy resistance.
OSBP2 and UNC119B were identified to be related to chemotherapy resistance. GSEA showed that WNT, MTOR, MAPK and NOTCH signaling pathways were activated, indicating that these pathways might play a crucial role during the Kla process. On the other hand, we showed that NR6A1 and OSBP2 were overexpressed in GEO.
OSBP2 and UNC119B contributed to poor survival and advanced stage in ICGC. In summary, histone Kla was related to HCC prognosis and might serve as an independent biomarker. NR6A1, OSBP2 and UNC119B were associated with the prognosis, immunotherapy, and chemotherapy resistance, suggesting that NR6A1, OSBP2 and UNC119B might be novel candidate therapeutic targets for HCC.
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