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综合泛癌分析揭示 NUSAP1 是一种新型的预后和免疫治疗反应预测生物标志物

英文原题:Comprehensive pan-cancer analysis reveals NUSAP1 is a novel predictive biomarker for prognosis and immunotherapy response.

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Comprehensive pan-cancer analysis reveals NUSAP1 is a novel predictive biomarker for prognosis and immunotherapy response.

PubMed 2023/09/04(内容时间) Int J Biol Sci Q1 · IF 11.7(JCR 2025)

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中文摘要

核仁和纺锤体相关蛋白1(NUSAP1)是一种微管相关蛋白,在有丝分裂中发挥关键作用。尽管最初的研究报道提示NUSAP1可能参与肿瘤进展和恶性细胞调控,但目前尚无对其在肿瘤免疫微环境中作用的系统分析,也缺乏其在不同癌症类型中预后和免疫治疗反应预测价值的研究。

在本研究中,我们利用TCGA、GTEx、CPTAC、HPA数据库及临床样本的数据,分析了NUSAP1 mRNA和蛋白在多种人类正常组织和肿瘤组织中的表达水平。

我们的研究结果显示,NUSAP1在大多数癌症类型的多种肿瘤组织中高表达,且根据TISCH数据库的单细胞测序数据,其主要表达于恶性细胞和免疫细胞中。基于TCGA数据库整理的生存数据进行预后分析表明,NUSAP1表达水平可预测26种癌症类型的临床结局。

此外,基因集富集分析(GSEA)提示NUSAP1促进细胞增殖、肿瘤细胞侵袭及抗肿瘤反应的调控。利用ESTIMATE、TIMER和TIP数据库对免疫评分、免疫细胞浸润及抗癌免疫循环的分析显示,NUSAP1高水平与CD4+ T细胞和NKT细胞浸润降低但Th2细胞和MDSC浸润升高相关,与抗原呈递分子呈负相关,与多种免疫负调控分子呈正相关。

值得注意的是,NUSAP1高表达的黑色素瘤、肺癌和肾癌患者生存时间更短,免疫治疗缓解率更低。通过Cmap分析,我们确定Entinostat和AACOCF3是NUSAP1介导的促癌效应的潜在抑制剂。体外和体内实验进一步证实,NUSAP1敲低显著降低了A549和MCF-7细胞的增殖能力。

总体而言,我们的研究强调了NUSAP1表达作为预测不同人类癌症预后和免疫治疗疗效的新型生物标志物的潜力,并表明其在开发新型抗肿瘤药物或改善免疫治疗方面的潜力。

展开英文摘要原文

Nucleolar and spindle-associated protein 1 (NUSAP1) is a microtubule-associated protein that plays a crucial role in mitosis. Despite initial reports suggesting a potential involvement of NUSAP1 in tumor progression and malignant cell regulation, there has been no systematic analysis of its role in the tumor immune microenvironment, nor its predictive value for prognosis and immunotherapy response across different cancer types.

In this study, we analyze NUSAP1 mRNA and protein expression levels in various human normal and tumor tissues, using data from TCGA, GTEx, CPTAC, HPA databases, and clinical samples.

Our findings reveal that NUSAP1 is highly expressed in multiple tumor tissues across most cancer types and is primarily expressed in malignant and immune cells, according to single-cell sequencing data from the TISCH database. Prognostic analysis based on curated survival data from the TCGA database indicates that NUSAP1 expression levels can predict clinical outcomes for 26 cancer types.

Furthermore, Gene Set Enrichment Analysis (GSEA) suggests that NUSAP1 promotes cell proliferation, tumor cell invasion, and regulation of anti-tumor response. Analysis of immune score, immune cell infiltration, and anti-cancer immunity cycle using ESTIMATE, TIMER, and TIP databases show that high NUSAP1 levels are associated with low CD4 + T and NKT cell infiltration but high Th2 and MDSC infiltration, inversely correlated with antigen-presenting molecules and positively correlated with a variety of immune negative regulatory molecules.

Notably, patients with melanoma, lung, and kidney cancer with high NUSAP1 expression levels have shorter survival times and lower immunotherapy response rates. Using Cmap analysis, we identify Entinostat and AACOCF3 as potential inhibitors of NUSAP1-mediated pro-oncogenic effects. In vitro and in vivo experiments further confirm that NUSAP1 knockdown significantly reduces the proliferation ability of A549 and MCF-7 cells.

Overall, our study highlights the potential of NUSAP1 expression as a novel biomarker for predicting prognosis and immuno-therapeutic efficacy across different human cancers and suggests its potential for developing novel antitumor drugs or improving immunotherapy.

论文信息

作者
Zheng H、Wang M、Zhang S、Hu D、Yang Q、Chen M、Zhang X、Zhang Y
单位
Department of Biological Sciences, Faculty of Science, National University of Singapore, Singapore, Singapore.Singapore
文献类型
非美国政府资助研究
期刊
International journal of biological sciences2023
原文标识
PubMed 37781040 · DOI 10.7150/ijbs.80017