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乳腺癌中基于机器学习的 TIL(肿瘤浸润淋巴细胞)评估的陷阱:国际乳腺癌免疫肿瘤学生物标志物工作组报告

英文原题:Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.

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Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.

PubMed 2023/08/23(内容时间) J Pathol Q1 · IF 5.4(JCR 2025)

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中文摘要

乳腺癌中肿瘤-免疫相互作用的临床意义现已确立,TIL(肿瘤浸润淋巴细胞)已成为三阴性(雌激素受体、孕激素受体和 HER2 均阴性)乳腺癌及 HER2 阳性乳腺癌患者的预测和预后生物标志物。目前仍在讨论计算方法评估 TIL 能否在临床试验和日常实践中补充人工 TIL 评估。近期利用机器学习(ML)自动评估 TIL 的研究已显示良好前景。本文综述最先进的方法,并通过研究 ML 评估与人工定量不一致的根本原因,指出自动化 TIL 评估中的陷阱和挑战。研究结果归纳为四个主题:(1)切片技术问题;(2)ML 和图像分析方面;(3)数据挑战;(4)验证问题。评估不一致的主要原因是:在某些组织形态或计算实现设计选择下,算法将假阳性区域或细胞纳入分析。为促进 ML 应用于 TIL 评估,本文深入讨论 ML 和图像分析,包括在将可靠的计算 TIL 报告应用于三阴性乳腺癌患者的临床试验和常规临床管理前需要考虑的验证问题。© 2023 作者。《Journal of Pathology》由 John Wiley & Sons Ltd 代表英国和爱尔兰病理学会出版。

展开英文摘要原文

The clinical significance of the tumor-immune interaction in breast cancer is now established, and tumor-infiltrating lymphocytes (TILs) have emerged as predictive and prognostic biomarkers for patients with triple-negative (estrogen receptor, progesterone receptor, and HER2-negative) breast cancer and HER2-positive breast cancer.

How computational assessments of TILs might complement manual TIL assessment in trial and daily practices is currently debated. Recent efforts to use machine learning (ML) to automatically evaluate TILs have shown promising results.

We review state-of-the-art approaches and identify pitfalls and challenges of automated TIL evaluation by studying the root cause of ML discordances in comparison to manual TIL quantification.

We categorize our findings into four main topics: (1) technical slide issues, (2) ML and image analysis aspects, (3) data challenges, and (4) validation issues. The main reason for discordant assessments is the inclusion of false-positive areas or cells identified by performance on certain tissue patterns or design choices in the computational implementation.

To aid the adoption of ML for TIL assessment, we provide an in-depth discussion of ML and image analysis, including validation issues that need to be considered before reliable computational reporting of TILs can be incorporated into the trial and routine clinical management of patients with triple-negative breast cancer. 2023 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

论文信息

作者
Thagaard J、Broeckx G、Page DB、Jahangir CA、Verbandt S、Kos Z、Gupta R、Khiroya R
第一作者单位
Technical University of Denmark, Kongens Lyngby, Denmark.Denmark
通讯作者单位
Department of Pathology, Herlev and Gentofte Hospital, Herlev, Denmark.Denmark
文献类型
综述 · 非美国政府资助研究 · 美国政府(非公共卫生署)资助研究 · 美国 NIH 资助研究
期刊
The Journal of pathology2023 Aug
原文标识
PubMed 37608772 · DOI 10.1002/path.6155