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膀胱癌中调节性 T 细胞与 NK 细胞浸润相关预后模型的建立

英文原题:Establishment of a prognostic model related to tregs and natural killer cells infiltration in bladder cancer.

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Establishment of a prognostic model related to tregs and natural killer cells infiltration in bladder cancer.

PubMed 2023/05/26(内容时间) World J Clin Cases

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研究概要

基于肿瘤组织中 Treg 和 NK 细胞浸润的膀胱肿瘤患者预后相关模型。除了判断膀胱癌患者的预后外,还可以预测患者对化疗和免疫治疗的敏感性。同时,根据该模型将患者分为高风险组和低风险组,并发现高风险组和低风险组之间存在基因突变差异。

研究思路结论见上方概要

调节性 T 细胞(Tregs)和自然杀伤(NK)细胞在膀胱尿路上皮癌(BUC)的发生发展中发挥重要作用。

构建膀胱癌患者预后判断的预后相关模型,同时预测患者对化疗和免疫治疗的敏感性。

膀胱癌信息数据来自癌症基因组图谱和GSE32894。使用CIBERSORT计算每个样本的免疫评分。采用加权基因共表达网络分析寻找具有相同或相似表达模式的基因。随后,使用多因素cox回归和lasso回归进一步筛选预后相关基因。使用prrophetic包从基因表达数据预测表型、外部细胞系的药物敏感性并预测临床数据。

分期和风险评分是BUC患者的独立预后因素。FGFR3突变导致Tregs浸润增加并影响肿瘤预后,此外,模型中的EMP1、TCHH和CNTNAP3B主要与免疫检查点表达呈正相关,而CMTM8、SORT1和IQSEC1与免疫检查点呈负相关,高风险组对化疗药物具有更高的敏感性。

展开英文摘要原文

Regulatory T cells (Tregs) and natural killer (NK) cells play an essential role in the development of bladder urothelial carcinoma (BUC). AIM: To construct a prognosis-related model to judge the prognosis of patients with bladder cancer, meanwhile, predict the sensitivity of patients to chemotherapy and immunotherapy.

Bladder cancer information data was obtained from The Cancer Genome Atlas and GSE32894. The CIBERSORT was used to calculate the immune score of each sample. Weighted gene co-expression network analysis was used to find genes that will have the same or similar expression patterns. Subsequently, multivariate cox regression and lasso regression was used to further screen prognosis-related genes. The prrophetic package was used to predict phenotype from gene expression data, drug sensitivity of external cell line and predict clinical data.

The stage and risk scores are independent prognostic factors in patients with BUC. Mutations in FGFR3 lead to an increase in Tregs percolation and affect the prognosis of the tumor, and additionally, EMP1, TCHH and CNTNAP3B in the model are mainly positively correlated with the expression of immune checkpoints, while CMTM8, SORT1 and IQSEC1 are negatively correlated with immune checkpoints and the high-risk group had higher sensitivity to chemotherapy drugs.

Prognosis-related models of bladder tumor patients, based on Treg and NK cell percolation in tumor tissue. In addition to judging the prognosis of patients with bladder cancer, it can also predict the sensitivity of patients to chemotherapy and immunotherapy. At the same time, patients were divided into high and low risk groups based on this model, and differences in genetic mutations were found between the high and low risk groups.

论文信息

作者
Yang YJ、Xu XQ、Zhang YC、Hu PC、Yang WX
第一作者单位
Shunde Hospital, Southern Medical University (The First People's Hospital of Shunde), Foshan 528308, Guangdong Province, China.China
通讯作者单位
The Graduate School/Department of Traditional Chinese Medicine, Tianjin Medical University/Tianjin Medical University General Hospital, Tianjin 300041, China. yangwuxia_09@tmu.edu.cn.China
期刊
World journal of clinical cases2023 May 26
原文标识
PubMed 37383920 · DOI 10.12998/wjcc.v11.i15.3444