RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:A Novel Immune Gene-Related Prognostic Score Predicts Survival and Immunotherapy Response in Glioma.
A Novel Immune Gene-Related Prognostic Score Predicts Survival and Immunotherapy Response in Glioma.
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基于异质性肿瘤细胞来源的基因特征对胶质瘤的临床预后和生存预测尚不理想。本研究旨在构建一个免疫基因相关预后评分模型,以预测胶质瘤的预后并识别可能从免疫治疗中获益的患者。
基于大规模 RNA-seq 数据,通过加权基因共表达网络分析(WGCNA)和单因素 Cox 回归分析,识别出 23 个与胶质瘤预后相关的免疫相关基因(IRGs)。通过多因素 Cox 回归分析,保留 8 个 IRGs 作为候选预测因子,并形成免疫基因相关预后评分(IGRPS)。通过肿瘤免疫功能障碍与排斥(TIDE)算法比较不同亚组免疫检查点阻断(ICB)治疗的潜在疗效。我们进一步采用一系列生物信息学方法,表征不同风险组之间临床病理特征和免疫微环境的差异。最后,构建整合 IGRPS 和临床病理特征的列线图,以准确预测胶质瘤的预后。
低风险组患者的预后优于高风险组。高风险组患者表现出更高的 TIDE 评分和对 ICB 治疗更差的反应,而低风险组患者可能从 ICB 治疗中获益更多。两个亚组之间年龄和肿瘤分级的分布存在显著差异。IGRPS 低的患者具有高比例的 natural killer 细胞,并对 ICB 治疗敏感。尽管IGRPS高的患者预后相对较差,但DNA错配修复基因表达水平较高,免疫抑制细胞浸润程度高,且ICB治疗结果不佳。
我们证明了IGRPS模型能够独立预测胶质瘤患者的临床预后以及ICB治疗反应,因此对基于免疫的治疗策略的设计具有重要意义。
Background and Objectives: The clinical prognosis and survival prediction of glioma based on gene signatures derived from heterogeneous tumor cells are unsatisfactory.
This study aimed to construct an immune gene-related prognostic score model to predict the prognosis of glioma and identify patients who may benefit from immunotherapy. Methods: 23 immune-related genes (IRGs) associated with glioma prognosis were identified through weighted gene co-expression network analysis (WGCNA) and Univariate Cox regression analysis based on large-scale RNA-seq data.
Eight IRGs were retained as candidate predictors and formed an immune gene-related prognostic score (IGRPS) by multifactorial Cox regression analysis. The potential efficacy of immune checkpoint blockade (ICB) therapy of different subgroups was compared by The Tumor Immune Dysfunction and Exclusion (TIDE) algorithm.
We further adopted a series of bioinformatic methods to characterize the differences in clinicopathological features and the immune microenvironment between the different risk groups.
Finally, a nomogram integrating IGRPS and clinicopathological characteristics was built to accurately predict the prognosis of glioma. Results: Patients in the low-risk group had a better prognosis than those in the high-risk group. Patients in the high-risk group showed higher TIDE scores and poorer responses to ICB therapy, while patients in the low-risk group may benefit more from ICB therapy. The distribution of age and tumor grade between the two subgroups was significantly different.
Patients with low IGRPS harbor a high proportion of natural killer cells and are sensitive to ICB treatment. While patients with high IGRPS display relatively poor prognosis, a higher expression level of DNA mismatch repair genes, high infiltrating of immunosuppressive cells, and poor ICB therapeutic outcomes. Conclusions: We demonstrated that the IGRPS model can independently predict the clinical prognosis as well as the ICB therapy responses of glioma patients, thus having important implications on the design of immune-based therapeutic strategies.
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