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CISD1 是一种与糖尿病相关的乳腺癌预后生物标志物

英文原题:CISD1 Is a Breast Cancer Prognostic Biomarker Associated with Diabetes Mellitus.

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CISD1 Is a Breast Cancer Prognostic Biomarker Associated with Diabetes Mellitus.

PubMed 2022/12/25(内容时间) Biomolecules Q1 · IF 5.6(JCR 2025)

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中文摘要

糖尿病患者被认为患乳腺癌的风险增加且预期寿命较低。本研究旨在描述CISD1、共表达基因与糖尿病之间的关联,为进一步的机制研究提供潜在治疗靶点。获取TCGA-BRCA RNAseq数据。所有数据使用R包和基于网络的生物信息学工具进行分析。评估CISD1基因在肿瘤组织和邻近组织之间的表达。进行免疫细胞浸润评估。CISD1在肿瘤组织中的表达显著高于正常组织,提示总生存率较差。肿瘤中CISD1高表达显示pDC和NK细胞浸润较少。以“diabetes”作为文本挖掘术语,BRCA中CISD1共表达基因池与糖尿病相关基因之间有138个共享基因。这些共享基因富集于“细胞周期”及其他通路。MCODE分析表明,p53非依赖性G1/S DNA损伤检查点、p53非依赖性DNA损伤应答以及泛素介导的磷酸化cdc25A降解排名高于其他条目。CISD1及其共表达基因,尤其是与糖尿病共享的基因,可作为在糖尿病背景下处理乳腺癌临床问题时重点关注的对象。

展开英文摘要原文

Women with diabetes mellitus are believed to have increased risk of developing breast cancer and lower life expectancies.

This study aims to depict the association between the CISD1, the co-expressed genes, and diabetes mellitus to offer potential therapeutic targets for further mechanical research. The TCGA-BRCA RNAseq data is acquired. All the data and analyzed using R packages and web-based bioinformatics tools. CISD1 gene expression was evaluated between tumor bulk and adjacent tissue. Immune cell infiltration evaluation was performed. CISD1 expressed significantly higher in tumor tissue than that of the normal tissue, indicating poor overall survival rates. High expression level of CISD1 in tumor shows less pDC and NK cells penetration.

There are 138 genes shared between CISD1 co-expressed gene pool in BRCA and diabetes mellitus related genes using "diabetes" as the term for text mining. These shared genes enrich in "cell cycle" and other pathways.

MCODE analysis demonstrates that p53-independent G1/S DNA damage checkpoint, p53-independent DNA damage response, and ubiquitin mediated degradation of phosphorylated cdc25A are top-ranked than other terms. CISD1 and co-expressed genes, especially shared ones with diabetes mellitus, can be the focused genes considered when addressing clinical problems in breast cancer with a diabetes mellitus background.

论文信息

作者
Liu F、Dong Y、Zhong F、Guo H、Dong P
第一作者单位
Department of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, Tianjin 300060, China.China
通讯作者单位
State Key Laboratory of Component-Based Chinese Medicine, Tianjin University of Traditional Chinese Medicine, 10 Poyanghu Road, Jinghai District, Tianjin 301617, China.China
文献类型
非美国政府资助研究
期刊
Biomolecules2022 Dec 25
原文标识
PubMed 36671422 · DOI 10.3390/biom13010037