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确定一种 DNA 修复相关基因特征,其可能对胰腺腺癌的预后和治疗反应具有潜在意义

英文原题:Determination of a DNA repair-related gene signature with potential implications for prognosis and therapeutic response in pancreatic adenocarcinoma.

查看英文原题

Determination of a DNA repair-related gene signature with potential implications for prognosis and therapeutic response in pancreatic adenocarcinoma.

PubMed 2022/10/24(内容时间) Front Oncol Q2 · IF 3.4(JCR 2025)

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研究概要

我们构建并验证了一种新型 DRG 特征,用于预测 PAAD 患者的预后和药物敏感性。我们的研究为进一步揭示 PAAD 的分子发病机制提供了理论基础,并有助于临床医生在个体化治疗框架内制定系统性治疗方案。

研究思路结论见上方概要

胰腺腺癌(PAAD)是全球癌症死亡的主要原因之一。DNA修复相关基因(DRG)的改变在多种癌症中均可观察到,并已被证明影响癌症的发生发展和治疗。本研究旨在构建一个DRG相关特征,用于预测PAAD的预后和治疗反应。

我们在TCGA训练集中使用最小绝对收缩和选择算子(LASSO)Cox回归分析构建了一个DRG特征。GEO数据集被用作验证集。基于多因素Cox回归构建了一个预测列线图。应用校准曲线和决策曲线分析(DCA)验证列线图的性能。利用CIBERSORT和ssGSEA算法探讨预后特征与免疫细胞浸润之间的关系。使用pRRophetic算法估计对化疗药物的敏感性。使用CellMiner数据库和PAAD细胞系研究DRG表达与治疗反应之间的关系。

我们开发了一个由三个DRG(RECQL、POLQ和RAD17)组成的DRG签名,能够预测PAAD患者的预后。我们开发了一个结合风险评分和临床因素的预后列线图,用于预后预测。DCA曲线和校准曲线表明,该列线图比风险评分和TNM分期系统具有更高的净获益。免疫浸润分析表明,风险评分与活化NK细胞和单核细胞的比例呈正相关。药物敏感性分析表明,该签名对化疗具有潜在的预测价值。利用CellMiner数据库的分析显示,RAD17表达与奥沙利铂相关。通过RT-qPCR检测了三个DRG对奥沙利铂响应的动态变化,结果表明RAD17在PAAD细胞系中对奥沙利铂响应时上调。

展开英文摘要原文

Pancreatic adenocarcinoma (PAAD) is one of the leading causes of cancer death worldwide. Alterations in DNA repair-related genes (DRGs) are observed in a variety of cancers and have been shown to affect the development and treatment of cancers. The aim of this study was to develop a DRG-related signature for predicting prognosis and therapeutic response in PAAD.

We constructed a DRG signature using least absolute shrinkage and selection operator (LASSO) Cox regression analysis in the TCGA training set. GEO datasets were used as the validation set. A predictive nomogram was constructed based on multivariate Cox regression. Calibration curve and decision curve analysis (DCA) were applied to validate the performance of the nomogram. The CIBERSORT and ssGSEA algorithms were utilized to explore the relationship between the prognostic signature and immune cell infiltration. The pRRophetic algorithm was used to estimate sensitivity to chemotherapeutic agents. The CellMiner database and PAAD cell lines were used to investigate the relationship between DRG expression and therapeutic response.

We developed a DRG signature consisting of three DRGs (RECQL, POLQ, and RAD17) that can predict prognosis in PAAD patients. A prognostic nomogram combining the risk score and clinical factors was developed for prognostic prediction. The DCA curve and the calibration curve demonstrated that the nomogram has a higher net benefit than the risk score and TNM staging system. Immune infiltration analysis demonstrated that the risk score was positively correlated with the proportions of activated NK cells and monocytes. Drug sensitivity analysis indicated that the signature has potential predictive value for chemotherapy. Analyses utilizing the CellMiner database showed that RAD17 expression is correlated with oxaliplatin. The dynamic changes in three DRGs in response to oxaliplatin were examined by RT-qPCR, and the results show that RAD17 is upregulated in response to oxaliplatin in PAAD cell lines.

We constructed and validated a novel DRG signature for prediction of the prognosis and drug sensitivity of patients with PAAD. Our study provides a theoretical basis for further unraveling the molecular pathogenesis of PAAD and helps clinicians tailor systemic therapies within the framework of individualized treatment.

论文信息

作者
Lai J、Chen W、Zhao A、Huang J
第一作者单位
Department of Oncology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China.China
通讯作者单位
Department of General Surgery, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China.China
期刊
Frontiers in oncology2022
原文标识
PubMed 36353555 · DOI 10.3389/fonc.2022.939891