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识别铜死亡相关亚型、开发预后模型,以及表征前列腺癌肿瘤微环境浸润

英文原题:Identification of cuproptosis -related subtypes, the development of a prognosis model, and characterization of tumor microenvironment infiltration in prostate cancer.

查看英文原题

Identification of cuproptosis -related subtypes, the development of a prognosis model, and characterization of tumor microenvironment infiltration in prostate cancer.

PubMed 2022/09/20(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

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中文摘要

铜死亡,即铜诱导的细胞死亡,是一种新定义的程序性细胞死亡类型,参与三羧酸(TCA)循环的调控。铜死亡功能障碍会诱导细胞毒性并影响多种肿瘤的增殖。

然而,铜死亡相关基因对前列腺癌的直接预后效应及其相应的调控机制仍不清楚。本研究采用多组学分析策略,探讨十个铜死亡相关基因在癌症基因组图谱-前列腺腺癌(TCGA-PRAD)中的作用。首先,阐述了这十个基因的mRNA表达、拷贝数变异(CNV)、突变、DNA甲基化及预后效能。基于转录组数据,我们开发了一个新的预后模型,命名为铜死亡相关基因评分(CRGScore),随后通过富集分析和无监督聚类分析检测了其生物学功能。之后,通过相关生物信息学算法阐述了它们与肿瘤免疫微环境(TIME)、免疫治疗、生化复发(BCR)和化疗耐药的相关性。十个铜死亡相关基因表现出广泛的CNV和DNA甲基化改变,并对前列腺癌患者的预后显示出显著影响。这些基因主要富集于E2F和G2M靶点及有丝分裂通路。高CRGScore样本表现出增强效应,导致T细胞、B细胞、NK细胞浸润增加。它们还与前前列腺癌中的BCR状态、八个免疫检查点的表达及化疗耐药密切相关。

我们对CRGScore的综合分析揭示了其影响肿瘤-免疫-基质微环境、临床病理特征和预后的广泛调控机制。我们还确定了CRGScore在靶向治疗和免疫治疗中的治疗责任。这些发现突出了CRGScore的重要临床意义,并为指导Pca患者的个性化免疫治疗策略提供了新思路。

展开英文摘要原文

Cuproptosis, Copper Induced Cell Death, is a newly defined type of programmed cell death, involving in the regulation of tricarboxylic acid (TCA) cycle. Dysfunction of cuproptosis induces cytotoxicity and influences the proliferation of multiple tumors.

However, the direct prognostic effect of cuproptosis related genes and corresponding regulating mechanisms amid prostate cancer remains unknown. A multi-omics analysis strategy was adopted to explore the role of ten cuproptosis related genes in The Cancer Genome Atlas- Prostate Adenocarcinoma (TCGA-PRAD). Firstly, mRNA expression, Copy Number Variance (CNV), mutation, DNA methylation and prognostic power of the ten genes were illustrated. Based on transcriptomic data, we developed a novel prognostic model named the Cuproptosis-related gene score (CRGScore), Their biological functions were then detected by enrichment analysis and unsupervised cluster analysis.

Following that, their correlation with Tumor Immune Microenvironment (TIME), immunotherapy, Biochemical Recurrence (BCR) and chemotherapeutic resistance were elaborated by relevant bioinformatics algorithms. Ten cuproptosis related genes exhibited extensive alteration of CNV and DNA methylation and showed significant influence on the prognosis of prostate cancer patients.

These genes mainly enriched in E2F and G2M targets and mitosis pathways, Samples with high CRGScore showed enhancement resulting in the increased infiltration of T cell, B cell, NK cells. They also demonstrated close correlations with the BCR status, expression of eight immune checkpoints and chemotherapeutic resistances in prostate cancer.

Our comprehensive analysis of CRGScore revealed an extensive regulatory mechanism by which they affect the tumor-immune-stromal microenvironment, clinicopathological features, and prognosis.

We also determined the therapeutic liability of CRGScore in targeted therapy and immunotherapy.

These findings highlight the crucial clinical implications of CRGScore and provide new ideas for guiding personalized immunotherapy strategies for patients with Pca.

论文信息

作者
Jin L、Mei W、Liu X、Sun X、Xin S、Zhou Z、Zhang J、Zhang B
单位
Department of Urology, Shanghai East Hospital, School of Medicine, Tongji University, Shanghai, China.China
文献类型
非美国政府资助研究
期刊
Frontiers in immunology2022
原文标识
PubMed 36203594 · DOI 10.3389/fimmu.2022.974034