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RCMNet:一个辅助 CAR-T 治疗白血病的深度学习模型

英文原题:RCMNet: A deep learning model assists CAR-T therapy for leukemia.

查看英文原题

RCMNet: A deep learning model assists CAR-T therapy for leukemia.

PubMed 2022/09/11(内容时间) Comput Biol Med

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中文摘要

急性白血病是一种死亡率很高的血液癌症。目前的治疗方法包括骨髓移植、支持治疗和化疗。尽管可以获得令人满意的疾病缓解,但复发风险仍然很高。

因此,迫切需要新的治疗方法。CAR-T(CAR-T)疗法已成为治疗和治愈急性白血病的一种有前景的方法。为了发挥CAR-T 细胞疗法对血液疾病的治疗潜力,可靠的细胞形态学识别至关重要。

然而,由于CAR-T 细胞与其他血细胞表型相似,其识别是一个巨大挑战。为应对这一重大临床挑战,我们首先构建了一个包含500张染色后原始显微镜图像的CAR-T 数据集。随后,我们创建了一个名为RCMNet(ResNet18 with Convolutional Block Attention Module and Multi-Head Self-Attention)的新型集成模型,该模型结合了卷积神经网络(CNN)和Transformer。该模型在公开数据集上显示出99.63%的top-1准确率。与既往报道相比,我们的模型在图像分类方面取得了令人满意的结果。尽管在CAR-T 细胞数据集上测试时观察到不错的表现,但这归因于数据集规模有限。对RCMNet采用迁移学习后,最高达到83.36%的准确率,高于其他最先进的模型。

本研究评估了RCMNet在大型公开数据集上的有效性,并将其转化应用于临床数据集以用于诊断应用。

展开英文摘要原文

Acute leukemia is a type of blood cancer with a high mortality rate. Current therapeutic methods include bone marrow transplantation, supportive therapy, and chemotherapy. Although a satisfactory remission of the disease can be achieved, the risk of recurrence is still high.

Therefore, novel treatments are demanding. Chimeric antigen receptor-T (CAR-T) therapy has emerged as a promising approach to treating and curing acute leukemia. To harness the therapeutic potential of CAR-T cell therapy for blood diseases, reliable cell morphological identification is crucial. Nevertheless, the identification of CAR-T cells is a big challenge posed by their phenotypic similarity with other blood cells. To address this substantial clinical challenge, herein we first construct a CAR-T dataset with 500 original microscopy images after staining.

Following that, we create a novel integrated model called RCMNet (ResNet18 with Convolutional Block Attention Module and Multi-Head Self-Attention) that combines the convolutional neural network (CNN) and Transformer. The model shows 99. 63% top-1 accuracy on the public dataset. Compared with previous reports, our model obtains satisfactory results for image classification.

Although testing on the CAR-T cell dataset, a decent performance is observed, which is attributed to the limited size of the dataset. Transfer learning is adapted for RCMNet and a maximum of 83. 36% accuracy is achieved, which is higher than that of other state-of-the-art models.

This study evaluates the effectiveness of RCMNet on a big public dataset and translates it to a clinical dataset for diagnostic applications.

论文信息

作者
Zhang R、Han X、Lei Z、Jiang C、Gul I、Hu Q、Zhai S、Liu H
第一作者单位
Institute of Biopharmaceutical and Health Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong 518055, China; Precision Medicine and Public Health, Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen, Guangdong 518055, China.China
通讯作者单位
Institute of Biopharmaceutical and Health Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong 518055, China; Precision Medicine and Public Health, Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen, Guangdong 518055, China. Electronic address: pwqin@sz.tsinghua.edu.cn.China
文献类型
非美国政府资助研究
期刊
Computers in biology and medicine2022 Nov
原文标识
PubMed 36155267 · DOI 10.1016/j.compbiomed.2022.106084