RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Novel LncRNA ZFHX4-AS1 as a Potential Prognostic Biomarker That Affects the Immune Microenvironment in Ovarian Cancer.
Novel LncRNA ZFHX4-AS1 as a Potential Prognostic Biomarker That Affects the Immune Microenvironment in Ovarian Cancer.
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卵巢癌(OvCa)是女性生殖系统的一种恶性肿瘤,死亡率高。LncRNA已被证实对多种癌症类型的发生和进展起关键作用。新型lncRNA ZFHX4-AS1已在几种癌症中被报道,但其在OvCa中的功能机制仍不清楚。
参照公共数据库并基于整合的生物信息学分析,我们探讨了ZFHX4-AS1的表达及其在OvCa预后中的作用。我们采用Kaplan-Meier曲线研究不同ZFHX4-AS1表达患者的结局。此外,通过基因本体(GO)注释、京都基因与基因组百科全书(KEGG)通路分析和Gene-set enrichment analysis(GSEA)评估了其生物学功能及相关标志性通路。我们通过CIBERSORT探讨了lncRNA ZFHX4-AS1与肿瘤浸润免疫细胞之间的相关性。研究了与lncRNA ZFHX4-AS1及其相关基因相关的免疫检查点。通过Cell Counting Kit(CCK)-8、集落形成、伤口愈合和transwell实验验证了lncRNA ZFHX4-AS1对OvCa细胞增殖、侵袭和迁移的影响。
lncRNA ZFHX4-AS1在OvCa中的表达相对于正常组织上调。lncRNA ZFHX4-AS1表达升高与OvCa中较差的总生存期和无进展生存期相关。GO和KEGG通路分析揭示了lncRNA ZFHX4-AS1在细胞代谢、蛋白质合成、细胞增殖和细胞周期中的作用。GSEA表明在高表达组和低表达组中显著富集的标志性基因集。CIBERSORT数据库显示M2巨噬细胞、记忆B细胞、初始B细胞和活化NK细胞受lncRNA ZFHX4-AS1表达的影响(均P < 0.05)。lncRNA ZFHX4-AS1及其相关差异基因MRPS11、NSA2和MRPL13的表达与免疫检查点显著相关。敲低lncRNA ZFHX4-AS1可抑制OvCa细胞的增殖、侵袭和迁移。
结果表明,lncRNA ZFHX4-AS1 是一种新的预后生物标志物,与 OvCa 中的细胞增殖、代谢、浸润以及肿瘤浸润免疫细胞的分布相关,提示 lncRNA ZFHX4-AS1 未来可作为 OvCa 的潜在治疗靶点。
Ovarian cancer (OvCa) is a malignant disease of the female reproductive system with a high mortality rate. LncRNA has been confirmed to play a crucial role in the development and progression of various cancer types. Novel lncRNA ZFHX4-AS1 has been reported in several cancers, albeit its functional mechanisms in OvCa remain unclear.
With reference to the public databases and based on integrating bioinformatics analyses, we explored the expression of ZFHX4-AS1 and its roles in the prognosis of OvCa. We employed the Kaplan-Meier curves to investigate the outcome of patients with different ZFHX4-AS1 expressions. Furthermore, its biological function and the related hallmark pathways were assessed through Gene Ontology (GO) annotation, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, and Gene-set enrichment analysis (GSEA). We explored the correlation between lncRNA ZFHX4-AS1 and tumor-infiltrating immune cells through CIBERSORT. The immune checkpoints associated with lncRNA ZFHX4-AS1 and its related genes were investigated. The effect of lncRNA ZFHX4-AS1 on proliferation, invasion and migration of OvCa cells was verified through Cell Counting Kit (CCK)-8, colony formation, wound healing and transwell assays.
The expression of lncRNA ZFHX4-AS1 was upregulated in OvCa relative to that in normal tissues. Increased lncRNA ZFHX4-AS1 expression was associated with poor overall survival and progression-free survival in OvCa. The GO and KEGG pathway analyses revealed the role of lncRNA ZFHX4-AS1 in cell metabolism, protein synthesis, cell proliferation, and cell cycle. GSEA indicated the hallmark gene sets that were significantly enriched in the high and low expression groups. The CIBERSORT database revealed M2 macrophages, memory B-cells, naïve B cells, and activated NK cells were affected by lncRNA ZFHX4-AS1 expression (all P < 0.05). The expression of lncRNA ZFHX4-AS1 and its related differential genes MRPS11 , NSA2 , and MRPL13 were significantly correlated with the immune checkpoints. Knockdown of lncRNA ZFHX4-AS1 could inhibit the proliferation, invasion and migration of OvCa cells.
The results suggested that lncRNA ZFHX4-AS1 is a novel prognostic biomarker associated with cell proliferation, metabolism, infiltration, and distribution of tumor-infiltrating immune cells in OvCa, indicating that lncRNA ZFHX4-AS1 can be used as a potential therapeutic target for OvCa in the future.
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