RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:High Expression of TACC3 Is Associated with the Poor Prognosis and Immune Infiltration in Lung Adenocarcinoma Patients.
High Expression of TACC3 Is Associated with the Poor Prognosis and Immune Infiltration in Lung Adenocarcinoma Patients.
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这项研究的结果提供了有力的证据,表明 TACC3 的表达可能是与 LUAD 中 TIICs 相关的预后标志物。TACC3 还可以作为潜在的治疗靶点,为免疫治疗提供新思路。
肺腺癌(LUAD)已被认为是人类最常见的侵袭性恶性肿瘤之一。转化酸性卷曲螺旋蛋白3(TACC3)似乎是非小细胞肺癌(NSCLC)可能的预后标志物和治疗靶点。然而,尚无关于TACC3与LUAD免疫治疗或其他治疗干预之间关联的报道。
基于从癌症基因组图谱(TCGA)-LUAD获取的数据,我们进行了生物信息学分析。利用GEPIA分析了LUAD中TACC3的表达。构建了生存模块以评估TACC3对LUAD患者生存的影响。采用逻辑回归检验TACC3表达与临床因素之间的关系。在GeneMANIA数据库中进行了蛋白质-蛋白质相互作用分析,并使用基因本体论和京都基因与基因组百科全书进行了富集分析和预测信号通路的鉴定。此外,使用Cox回归评估了与TCGA患者总生存期相关的临床病理特征。最后,我们通过CIBERSORT和GEPIA的“相关性”模块研究了TACC3与肿瘤浸润免疫细胞(TIICs)之间的联系。使用CellMiner数据库分析了TACC3基因表达与药物反应之间的关联,以预测药物敏感性。
结果说明,TACC3在LUAD患者中表达上调,并与不良预后显著相关。此外,多因素Cox回归分析显示TACC3是LUAD患者的独立预后标志物。研究还揭示,TACC3的表达与临床分期(P = 0.014)、年龄(P = 0.002)和T分类(P ≤ 0.018)相关。此外,我们发现TACC3的表达与多种TIIC显著相关,尤其是T细胞和NK细胞。单细胞结果发现,TACC3主要表达于免疫细胞(尤其是tprolif细胞)和恶性细胞中。TACC3基因表达与TMB和MSI呈正相关,TACC3可能可预测免疫治疗的疗效。此外,TACC3基因表达与免疫检查点基因表达之间的相关性分析显示,TACC3可能在不同信号转导通路中协调这些ICP基因的活性。TACC3与生物学过程(BP)、细胞组分(CC)和分子功能(MF)相关。涉及TACC3的相互作用网络所涉及的通路包括非同源末端连接、RNA转运、泛酸和CoA生物合成、同源重组以及核苷酸切除修复。此外,我们研究了TACC3表达与抗肿瘤药物使用之间的关联,TACC3与大多数药物的反应呈正相关。
Lung adenocarcinoma (LUAD) has been recognized as one of the commonest aggressive malignant tumors occurring in humans. The transforming acidic coiled-coil-containing protein 3 ( TACC3 ) seems to be a probable prognostic marker and treatment target for non-small-cell lung cancer (NSCLC). Nevertheless, there exist no reports on the association between TACC3 and immunotherapy or other therapeutic interventions in LUAD.
Premised on the data accessed from The Cancer Genome Atlas- (TCGA-) LUAD, we carried out bioinformatics analysis. The TACC3 expression in LUAD was analyzed utilizing the GEPIA. A survival module was constructed to evaluate the effect of TACC3 on the survival of patients with LUAD. Logistic regression was undertaken to examine the relationship between TACC3 expression and clinical factors. Protein-protein interaction analysis was performed in the GeneMANIA database, and enrichment analysis and identification of predicted signaling pathways were performed using Gene Ontology and Kyoto Encyclopedia of Genes. Additionally, the Cox regression was used to assess the clinicopathologic features linked to the overall survival in TCGA patients. Lastly, we investigated the link between TACC3 and tumor-infiltrating immune cells (TIICs) through CIBERSORT and the "Correlation" module of GEPIA. The association between TACC3 gene expression and drug response was analyzed using the CellMiner database to predict drug sensitivity.
The outcomes illustrated that TACC3 was upregulated and considerably correlated with dismal prognosis in LUAD patients. Moreover, the multivariate Cox regression analysis depicted TACC3 as an independent prognostic marker in LUAD patients. It was also revealed that the expression of TACC3 was related to clinical stage ( P = 0.014), age ( P = 0.002), and T classification ( P ≤ 0.018). Moreover, we discovered that the expression of TACC3 was considerably linked to a wide range of TIICs, especially the T cells and NK cells. Single-cell results found that TACC3 was mainly expressed in the immune cells (especially tprolif cells) and malignant cells. TACC3 gene expression was positively correlated with TMB and MSI, and TACC3 may provide a prediction of the efficacy of immunotherapy. Moreover, the correlation analysis between TACC3 gene expression and immune checkpoint gene expression revealed that TACC3 may coordinate the activities of these ICP genes in different signal transduction pathways. TACC3 is related to biological progress (BP), cellular component (CC), and molecular function (MF). The pathways involved in the interaction network involving TACC3 include nonhomologous end-joining, RNA transport, pantothenate and CoA biosynthesis, homologous recombination, and nucleotide excision repair. Furthermore, we investigated the association between the expression of TACC3 and the use of antitumor drugs, and TACC3 was positively correlated with response to most drugs.
The findings from this research offer robust proof that the expression of TACC3 could be a prognostic marker correlated with TIICs in LUAD. TACC3 can also provide new ideas for immunotherapy as a potential therapeutic target.
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