研究概要
跨膜转运蛋白 Sema3D 通过发挥抑癌作用,是局限性 ccRCC 患者的高效预后生物标志物。Sema3D 可作为 ccRCC 的新治疗靶点。
研究思路结论见上方概要
背景
跨膜转运蛋白Sema3D是参与轴突导向和多种恶性肿瘤癌变过程的重要分子。然而,Sema3D与透明细胞肾细胞癌(ccRCC)之间的关系鲜有报道,目前仍不明确。
方法
首先利用TCGA数据库中的转录组数据分析了Sema3D表达与临床及组织学特征的联系。随后,我们通过组织芯片的免疫荧光染色定位并检测了ccRCC患者中Sema3D的表达。采用Cox比例风险分析评估了Sema3D在局限性ccRCC中的预后价值。通过功能及基因集富集分析(GSEA)、基因本体论(GO)和京都基因与基因组百科全书(KEGG)来阐述Sema3D在ccRCC中的潜在机制。Sema3D与TIL(肿瘤浸润淋巴细胞)之间的相关性分析通过ssGSEA计算得出。
结果
在86例ccRCC患者中,肿瘤组织中Sema3D mRNA和蛋白表达较癌旁组织下调,且Sema3D主要表达于细胞外空间。Sema3D低表达与ccRCC晚期肿瘤分期、高级别组织学分级和不良预后相关。在81例局限性ccRCC患者的亚组分析中,Sema3D表达水平是总生存期(OS)的独立保护性预后因素(HR = 0.125,p =0.043)。凝血、补体、雌激素反应和KRAS信号标志基因集被鉴定为Sema3D相关信号通路。Sema3D的表达水平与多种免疫细胞(中性粒细胞、嗜酸性粒细胞和T辅助细胞)的高丰度显著相关。
展开英文摘要原文
BACKGROUND
The transmembrane transporter Sema3D is a vital molecule involved in axon guidance and carcinogenesis of variant malignancies. However, the relationship between Sema3D and clear cell renal cell carcinoma (ccRCC) is barely reported and remains unclear.
METHODS
Sema3D expression and the connection of clinical and histological characteristics were first analyzed with transcriptome data in the TCGA repository. We then located and examined the Sema3D expression in ccRCC patients by using immunofluorescence staining in the tissue microarray. The prognostic value of Sema3D in localized ccRCC was evaluated by Cox proportional hazard analysis. Functional and gene set enrichment analysis (GSEA), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) were performed to describe the potential mechanisms of Sema3D in ccRCC. Correlation analysis between Sema3D and tumor-infiltrating lymphocytes was calculated by ssGSEA.
RESULTS
In 86 ccRCC patients, Sema3D mRNA and protein expression were downregulated in tumor tissues than the para-tumor tissues, and Sema3D was dominantly expressed in the extracellular space. Low expression of Sema3D was associated with advanced tumor stage, advanced histological grade, and poor prognosis in ccRCC. In the subgroup analysis of 81 localized ccRCC patients, Sema3D expression level was an independent protective prognostic factor for overall survival (OS) (HR = 0.125, p =0.043). Coagulation, complement, estrogen response, and KRAS signaling hallmark gene sets were identified as Sema3D-related signaling pathways. The expression level of Sema3D was significantly correlated with a high abundance of several immune cells (neutrophils, eosinophils, and T helper cells).
CONCLUSIONS
Transmembrane transporter Sema3D is an efficient prognostic biomarker for localized ccRCC patients, by playing the role of tumor suppressor in ccRCC. Sema3D can be a novel therapeutic target for ccRCC.
论文信息
- 作者
- Xie R、Wu J、Shang B、Cao C、Bi X、Shi H、Shou J、Guan Y
- 单位
- Department of Urology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Chaoyang District, Beijing, China.China
- 期刊
- Journal of oncology2022