RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:The Regulatory Role of Neuropeptide Gene Glucagon in Colorectal Cancer: A Comprehensive Bioinformatic Analysis.
The Regulatory Role of Neuropeptide Gene Glucagon in Colorectal Cancer: A Comprehensive Bioinformatic Analysis.
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在 COADREAD 中观察到 GCG 失调具有高预后价值。多个肿瘤进展相关通路和肿瘤免疫调节细胞与 COADREAD 中 GCG 表达相关。因此,GCG 可能被视为治疗结直肠癌的潜在治疗靶点。
结直肠癌发病率高,全球死亡率高,胰高血糖素轴与结肠癌有关。本研究旨在探讨胰高血糖素参与结直肠癌的调控机制。
利用TCGA数据库中的公开数据,探讨胰高血糖素(GCG)在结直肠癌(COADREAD)中的表达模式及调控作用,包括结肠腺癌(COAD)和直肠腺癌(READ)。使用R软件包和公共网络服务器进行统计分析。通过非配对和配对样本分析,研究GCG基因在泛癌和TCGA-COADREAD数据中的表达模式及预后意义。采用logistic回归分析研究GCG表达与临床特征的关联。进行单因素cox回归分析以检验GCG表达对COADREAD患者总生存期的预后价值。获得GCG显著相关基因。通过功能富集分析和基因集富集分析(GSEA)鉴定生物学功能和信号通路。此外,通过研究GCG表达与24种肿瘤浸润免疫细胞之间的相关性,探讨GCG在肿瘤免疫中的潜在参与。
GCG在COADREAD肿瘤样本中较健康对照样本显著下调。GCG基因与COADREAD的预后结果相关,其上调预示生存结果改善。功能富集分析显示,与GCG正相关排名前100和负相关排名前100的基因主要富集于三条信号通路,包括核糖体、氮代谢和近端肾小管碳酸氢盐回收。GSEA显示,与GCG显著相关的基因主要富集于细胞周期相关通路(reactome cell cycle、reactome cell cycle mitotic、reactome cell cycle checkpoints、reactome M phase、Reactome G2 M DNA damage checkpoint和Reactome G2 M checkpoints)、神经肽配体受体相互作用、RHO GTPases信号传导、WNT信号传导、RUNX1信号传导、NOTCH信号传导、ESR信号传导、HCMV感染和氧化应激相关信号传导。GCG与Th17细胞、pDC、巨噬细胞、TFH细胞、iDC、Tem、B细胞、树突状细胞、中性粒细胞、肥大细胞和嗜酸性粒细胞呈正相关,与NK细胞呈负相关。
Colorectal cancer is highly prevalent and causes high global mortality, and glucagon axis has been implicated in colon cancer. The present study is aimed at investigating the regulating mechanisms of glucagon involvement in colorectal cancer.
Publicly available data from the TCGA database was utilized to explore the expression pattern and regulating role of glucagon (GCG) in colorectal cancer (COADREAD) including colon adenocarcinomas (COAD) and rectum adenocarcinomas (READ). Statistical analyses were performed using the R software packages and public web servers. The expression pattern and prognostic significance of GCG gene in pan-cancer and TCGA-COADREAD data were investigated by performing unpaired and paired sample analyses. The association of GCG expression with clinical characteristics was investigated using logistic regression analysis. Univariate cox regression analysis was performed to test the prognostic value of GCG expression for overall survival in COADREAD patients. GCG-significantly correlated genes were obtained. Biological functions and signaling pathways were identified by performing functional enrichment analysis and Gene Set Enrichment Analysis (GSEA). Additionally, the potential involvement of GCG in tumor immunity was researched by investigating the correlation between GCG expression and 24 tumor infiltrating immune cells.
GCG was found to be significantly downregulated in COADREAD tumor samples compared with healthy control samples. GCG gene was shown to be associated with the prognostic outcomes of COADREAD, whereby its upregulation predicted improved survival outcomes. Functional enrichment analysis showed that the top 100 positively and top 100 negatively GCG-correlated genes were mainly enriched in three signaling pathways including ribosome, nitrogen metabolism, and proximal tubule bicarbonate reclamation. The GSEA showed that GCG-significantly correlated genes were mainly enriched in cell cycle-related pathways (reactome cell cycle, reactome cell cycle mitotic, reactome cell cycle checkpoints, reactome M phase, Reactome G2 M DNA damage checkpoint, and Reactome G2 M checkpoints), neuropeptide ligand receptor interaction, RHO GTPases signaling, WNT signaling, RUNX1 signaling, NOTCH signaling, ESR signaling, HCMV infection, and oxidative stress-related signaling. GCG was positively correlated with Th17 cells, pDC, macrophages, TFH cells, iDC, Tem, B cells, dendritic cells, neutrophils, mast cells, and eosinophils and was negatively associated with NK cells.
GCG dysregulation with high prognostic value in COADREAD was noted. Several tumor progression-related pathways and tumor immune-modulatory cells were linked to GCG expression in COADREAD. Therefore, GCG may be regarded as a potential therapeutic target for treating colorectal cancer.
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