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细胞焦亡调节因子在胰腺腺癌的预后、进展和免疫微环境中发挥关键作用:一项生物信息学和体外研究

英文原题:Pyroptosis regulators exert crucial functions in prognosis, progression and immune microenvironment of pancreatic adenocarcinoma: a bioinformatic and in vitro research.

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Pyroptosis regulators exert crucial functions in prognosis, progression and immune microenvironment of pancreatic adenocarcinoma: a bioinformatic and in vitro research.

PubMed 2022/01/01(内容时间) Bioengineered

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中文摘要

细胞焦亡是一种炎症性程序性细胞死亡,显示出作为新型抗癌方法的潜力。然而,细胞焦亡相关(PR)基因(PRGs)在胰腺腺癌(PAAD)中的作用仍不明确。

在本研究中,我们通过lasso回归分析构建了一个新的PR风险特征。该风险特征对PAAD预后评估非常有益。PR风险评分被确定为独立预后因素,并且能够区分大多数临床亚组的预后差异。

同时,它可以改进基于TNM分期的传统预后模型。接下来,其预后价值也在五个验证队列中进行了检验。使用CIBERSORT、ESTIMATE和ssGSEA算法,探讨了PR风险特征对肿瘤免疫微环境(TIM)的影响。高PR风险通过降低CD8 T细胞和NK细胞的浸润水平抑制抗肿瘤免疫。通过USCA和HPA数据库揭示了风险PRGs的基因组信息和组织学表达。八个PRGs的体细胞突变、甲基化改变和纯合CNV在PAAD样本中几乎不发生。至于治疗相关性,PR风险评分可能无法预测PD-1/L1抑制剂的疗效,并且与多种药物敏感性弱相关。

最后,通过qPCR、MTT、集落形成和Transwell实验研究了toll样受体3(TLR3)在胰腺癌(PC)细胞中的生物功能。TLR3过表达可促进PC细胞的增殖、迁移和侵袭。

总之,PRGs在PAAD的预后、进展和免疫微环境中发挥关键作用。TLR3有望成为一个有前景的治疗靶点。

展开英文摘要原文

Pyroptosis is an inflammatory programmed cell death, showing potentials to be a novel anti-cancer approach.

However, the roles of pyroptosis-related (PR) genes (PRGs) in pancreatic adenocarcinoma (PAAD) remain elusive. In the present study, we constructed a novel PR risk signature through the lasso regression analysis. The risk signature was greatly conducive to PAAD prognostic assessment. PR risk score was identified as an independent prognostic factor and could distinguish the prognostic differences of most clinical subgroups. Meanwhile, it could improve the traditional prognostic models based on TNM-staging. Next, its prognostic value was also tested in five validation cohorts.

Using CIBERSORT, ESTIMATE, and ssGSEA algorithms, the effects of PR risk signature on tumor immune microenvironment (TIM) were explored. High PR risk suppressed antitumor immune through decreasing the infiltrating levels of CD8 T and NK cells. The genomic information and histological expression of risk PRGs were uncovered by USCA and HPA databases.

Somatic mutation, methylation alteration, and homozygous CNV of eight PRGs barely occurred in PAAD samples. As for therapeutic correlation, PR risk score may not predict the efficacy of PD-1/L1 inhibitors and was weakly associated with multiple drug susceptibilities.

Finally, the biofunctions of toll like receptor 3 (TLR3) in pancreatic cancer (PC) cells were investigated through qPCR, MTT, colony formation, and Transwell assays. Overexpression of TLR3 could promote the proliferation, migration, and invasion of PC cells.

In conclusion, PRGs play crucial roles in prognosis, progression, and immune microenvironment of PAAD. TLR3 is expected to be a promising therapeutic target.

论文信息

作者
Bai Z、Xu F、Feng X、Wu Y、Lv J、Shi Y、Pei H
单位
Department of Emergency, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi Province, China.China
期刊
Bioengineered2022 Jan
原文标识
PubMed 35000541 · DOI 10.1080/21655979.2021.2019873