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PIWIL4 和 SUPT5H 联合预测肝内胆管癌的预后和免疫景观

英文原题:PIWIL4 and SUPT5H combine to predict prognosis and immune landscape in intrahepatic cholangiocarcinoma.

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PIWIL4 and SUPT5H combine to predict prognosis and immune landscape in intrahepatic cholangiocarcinoma.

PubMed 2021/12/07(内容时间) Cancer Cell Int Q1 · IF 7(JCR 2025)

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研究概要

在本研究中,我们证明了 PIWIL4 和 SUPT5H 可作为新型预后生物标志物,用于构建预后特征。本研究为肝内胆管癌患者提供了具有预后价值的潜在生物标志物。

研究思路结论见上方概要

肝内胆管癌(ICC)是一种致命的原发性肝癌,其长期生存率仍然很低。RNA结合蛋白(RBPs)在关键细胞过程中发挥重要作用,任何一个或多个过程的失败都可能导致多种癌症的发生。本研究旨在探索关键生物标志物及相关机制,以预测ICC患者的预后。

从癌症基因组图谱和基因表达综合数据库中收集了患者的转录组和临床信息。采用生物信息学方法识别与生存相关且差异表达的生物标志物。使用定量实时PCR(qRT-PCR)和免疫组织化学在独立的真实世界队列中检测关键生物标志物的表达水平。随后,构建了一个预后特征,有效区分了高风险组和低风险组的患者。使用独立预后分析验证了该特征的独立预测能力,并开发了两个列线图来预测生存。

PIWIL4和SUPT5H被确定并被认为是关键生物标志物,其在ICC中上调的相同表达趋势也在独立的真实世界样本队列中通过qRT-PCR和免疫组织化学得到验证。根据曲线下面积,该预后特征显示出良好的预测能力。生物标志物与肿瘤微环境的相关性表明,高风险评分与静息NK 细胞和活化记忆CD4+ T细胞的富集呈正相关。

展开英文摘要原文

Intrahepatic cholangiocarcinoma (ICC) is a fatal primary liver cancer, and its long-term survival rate remains poor. RNA-binding proteins (RBPs) play an important role in critical cellular processes, failure of any one or more processes can lead to the development of multiple cancers. This study aimed to explore pivotal biomarkers and corresponding mechanisms to predict the prognosis of patients with ICC.

The transcriptomic and clinical information of patients were collected from The Cancer Genome Atlas and Gene Expression Omnibus databases. Bioinformatic methods were used to identify survival-related and differentially-expressed biomarkers. Quantitative real-time PCR (qRT-PCR) and immunohistochemistry were used to detect the expression levels of key biomarkers in independent real-world cohorts. Subsequently, a prognostic signature was constructed that effectively distinguished patients in the high- and low-risk groups. Independent prognosis analysis was used to verify the signature's independent predictive capabilities, and two nomograms were developed to predict survival.

PIWIL4 and SUPT5H were identified and considered as pivotal biomarkers, and the same expression trends of upregulation in ICC were also validated via qRT-PCR and immunohistochemistry in the separate real-world sample cohorts. The prognostic signature showed good predictive capabilities according to the area under the curve. The correlation of the biomarkers with the tumour microenvironment suggested that the high riskScore was positively related to the enrichment of resting natural killer cells and activated memory CD4 + T cells.

In the present study, we demonstrated that PIWIL4 and SUPT5H could be used as novel prognostic biomarkers to develop a prognostic signature. This study provides potential biomarkers of prognostic value for patients with intrahepatic cholangiocarcinoma.

论文信息

作者
Zou W、Wang Z、Zhang X、Xu S、Wang F、Li L、Deng Z、Wang J
第一作者单位
Medical School of Chinese PLA, Beijing, China.China
通讯作者单位
Faculty of Hepato-Pancreato-Biliary Surgery, The First Medical Center of Chinese People's Liberation Army (PLA) General Hospital, No.28 Fuxing Road, Haidian District, Beijing, 100853, China. huminggen@301hospital.com.cn.China
期刊
Cancer cell international2021 Dec 7
原文标识
PubMed 34876138 · DOI 10.1186/s12935-021-02310-2