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识别与乳头状肾细胞癌免疫浸润相关的潜在生物标志物

英文原题:Identification of potential biomarkers associated with immune infiltration in papillary renal cell carcinoma.

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Identification of potential biomarkers associated with immune infiltration in papillary renal cell carcinoma.

PubMed 2021/10/04(内容时间) J Clin Lab Anal Q2 · IF 2.5(JCR 2025)

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研究概要

在本研究中,我们的数据揭示了 pRCC 的关键 TIICs 和潜在的免疫相关生物标志物,并为 pRCC 的发病机制和潜在治疗靶点提供了有力的见解。

研究思路结论见上方概要

免疫治疗方法近来已成为对抗多种类型癌症的有效治疗方案。然而,围绕乳头状肾细胞癌(pRCC)的免疫介导机制仍不清楚。本研究旨在探讨肿瘤微环境(TME)并识别pRCC潜在的免疫相关生物标志物。

采用CIBERSORT算法计算每个pRCC样本中免疫细胞的丰度比例。采用单因素Cox分析筛选与预后相关的肿瘤浸润免疫细胞(TIICs)。进行多因素Cox回归分析,以基于筛选出的预后相关TIICs构建特征。然后,根据所得特征将这些pRCC样本分为低危组和高危组。使用基因本体(GO)、京都基因与基因组百科全书(KEGG)和Gene Set Enrichment Analysis(GSEA)进行分析,以研究高危组和低危组之间DEGs(差异表达基因)的生物学功能。使用加权基因共表达网络分析(WGCNA)和蛋白质-蛋白质相互作用(PPI)分析鉴定枢纽基因。随后通过多个临床特征和数据库对枢纽基因进行验证。

根据我们的分析,九种免疫细胞在pRCC的TME中发挥重要作用。我们的分析还获得了九个潜在的pRCC免疫相关生物标志物,包括TOP2A、BUB1B、BUB1、TPX2、PBK、CEP55、ASPM、RRM2和CENPF。

展开英文摘要原文

Immunotherapeutic approaches have recently emerged as effective treatment regimens against various types of cancer. However, the immune-mediated mechanisms surrounding papillary renal cell carcinoma (pRCC) remain unclear. This study aimed to investigate the tumor microenvironment (TME) and identify the potential immune-related biomarkers for pRCC.

The CIBERSORT algorithm was used to calculate the abundance ratio of immune cells in each pRCC samples. Univariate Cox analysis was used to select the prognostic-related tumor-infiltrating immune cells (TIICs). Multivariate Cox regression analysis was performed to develop a signature based on the selected prognostic-related TIICs. Then, these pRCC samples were divided into low- and high-risk groups according to the obtained signature. Analyses using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) were performed to investigate the biological function of the DEGs (differentially expressed genes) between the high- and low-risk groups. The hub genes were identified using a weighted gene co-expression network analysis (WGCNA) and a protein-protein interaction (PPI) analysis. The hub genes were subsequently validated by multiple clinical traits and databases.

According to our analyses, nine immune cells play a vital role in the TME of pRCC. Our analyses also obtained nine potential immune-related biomarkers for pRCC, including TOP2A, BUB1B, BUB1, TPX2, PBK, CEP55, ASPM, RRM2, and CENPF.

In this study, our data revealed the crucial TIICs and potential immune-related biomarkers for pRCC and provided compelling insights into the pathogenesis and potential therapeutic targets for pRCC.

论文信息

作者
Deng R、Li J、Zhao H、Zou Z、Man J、Cao J、Yang L
单位
Department of Urology, Lanzhou University Second Hospital, Lanzhou, China.China
期刊
Journal of clinical laboratory analysis2021 Nov
原文标识
PubMed 34606125 · DOI 10.1002/jcla.24022