研究概要
细胞衰老(CS)在肿瘤发生中发挥双重作用,但其泛癌分子特征和临床价值仍不清楚,阻碍了其向肿瘤学和个性化治疗的转化。
中文摘要
细胞衰老(CS)在肿瘤发生中发挥双重作用,但其泛癌分子特征和临床价值仍不清楚,阻碍了其向肿瘤学和个体化治疗的转化。为弥补衰老评估和免疫治疗反应预测缺乏特异且通用工具的不足,本研究整合多组学数据,包括 bulk RNA-seq、单细胞/空间转录组学和 CRISPR 筛选,系统分析了来自 CellAge 数据库的 1259 个 CS 相关基因在 31 种癌症类型中的情况。我们开发了基于秩的算法 SenScoreR(公开获取地址:https://gxhub.shinyapps.io/SenScoreR/)用于衰老定量,并用 10 个独立数据集进行了验证,同时构建了基于机器学习的免疫治疗反应预测模型 CS.Sig。结果显示,在 31 种癌症中,肿瘤的基于秩的衰老评分(RSS)显著低于正常组织(平均诊断 AUC = 0.895),低 RSS 与较差生存相关;高 RSS 与基因组不稳定性降低、CD8 T/NK 细胞/巨噬细胞浸润富集、PD-L1 表达上调以及免疫细胞溶解活性升高相关。CS.Sig 在预测 ICI 反应方面表现出稳健性能(10 个队列中 AUC = 0.716),优于 13 个现有特征,而 CRISPR 筛选鉴定出 17 个衰老相关靶点(例如 CEP55、PPP1CC),其敲除可增强抗肿瘤免疫。我们的发现阐明了 CS 在维持肿瘤基因组稳定性和塑造免疫微环境中的作用,所开发的 SenScoreR、CS.Sig 以及鉴定出的靶点将基础 CS 研究与临床肿瘤学连接起来,为未来实验和临床验证提供了转化资源和假设基础。
展开英文摘要原文
Cellular senescence (CS) exerts dual roles in tumorigenesis, yet its pan-cancer molecular characteristics and clinical value remain unclear, hindering its translation to oncology and personalized therapy. To address the lack of specific and universal tools for senescence assessment and immunotherapy response prediction, this study systematically analyzed 1259 CS-related genes from the CellAge database across 31 cancer types by integrating multi-omics data, including bulk RNA-seq, single-cell/spatial transcriptomics, and CRISPR screening. We developed a rank-based algorithm SenScoreR (publicly available at https://gxhub.shinyapps.io/SenScoreR/ ) for senescence quantification, validated with 10 independent datasets, and constructed a machine learning-based predictive model CS.Sig for immunotherapy response. Results showed that tumors had significantly lower Rank-based Senescence Score (RSS) than normal tissues across 31 cancers (average diagnostic AUC = 0.895), with low RSS linked to poor survival; high RSS correlated with reduced genomic instability, enriched CD8 T/NK cell/macrophage infiltration, upregulated PD-L1 expression, and elevated immune cytolytic activity. CS.Sig demonstrated robust performance in predicting ICI response (AUC = 0.716 across 10 cohorts), outperforming 13 existing signatures, while CRISPR screening identified 17 senescence-related targets (e.g., CEP55, PPP1CC) whose knockout enhanced anti-tumor immunity. Our findings clarify CS's role in maintaining tumor genomic stability and shaping immune microenvironments, and the developed SenScoreR, CS.Sig, and identified targets bridge basic CS research with clinical oncology, providing a translational resource and hypothesis basis for future experimental and clinical validation.
论文信息
- 作者
- Gao X、Zhou XJ
- 单位
- Department of Clinical Laboratory, Xiangya Hospital, Central South University, Changsha, China. gaoxin@xiangya.com.cn.China
- 期刊
- Cancer gene therapy2026 Sep 10