CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Integrative multi-omics profiling identifies a lactylation-associated, metabolically active, and immunosuppressive subtype of colon adenocarcinoma.
Integrative multi-omics profiling identifies a lactylation-associated, metabolically active, and immunosuppressive subtype of colon adenocarcinoma.
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乳酰化相关转录程序勾勒出一种代谢活跃、免疫抑制的 COAD 亚型,其特征为不良预后和治疗耐药。这种基于乳酰化的评分可作为临床相关生物标志物,也是代谢-表观遗传与免疫治疗联合干预的有前景靶点。
组蛋白乳酰化是一种由乳酸衍生的翻译后修饰,连接了代谢活动与基因调控。然而,其在结肠腺癌(COAD)中的分子机制和临床意义仍鲜有表征。
我们对TCGA和GTEx数据集进行了多组学分析,通过差异表达、富集分析、突变谱分析和免疫去卷积来表征乳酸化相关基因。随后的预后建模、转录网络构建和药物敏感性预测评估了它们的生物学和临床相关性。
我们鉴定出133个乳酰化相关基因,并构建了一个八基因预后特征(CCNA2、CALD1、CSRP2、MSN、RPS23、PSME3IP1、VIM和SRRM2)。高评分肿瘤表现出更差的总生存期,富集糖酵解、细胞周期和上皮-间质转化通路,以及TP53和KRAS突变增加。单细胞和蛋白质水平分析将关键基因定位至内皮和巨噬细胞区室。单细胞和蛋白质水平分析将关键基因主要定位至内皮和巨噬细胞区室。此外,高评分肿瘤显示细胞毒性T细胞和NK细胞浸润减少,M0/M2巨噬细胞增加,TIDE评分升高,免疫表型评分降低,表明存在深度免疫抑制。它们还表现出更高的干性以及对5-氟尿嘧啶、奥沙利铂和索拉非尼的敏感性降低。
Histone lactylation, a lactate-derived post-translational modification, bridges metabolic activity and gene regulation. However, its molecular mechanisms and clinical significance in colon adenocarcinoma (COAD) remain poorly characterized.
We conducted multi-omics analyses on TCGA and GTEx datasets, characterizing lactylation-associated genes via differential expression, enrichment, mutation profiling, and immune deconvolution. Subsequent prognostic modeling, transcriptional network construction, and drug sensitivity predictions assessed their biological and clinical relevance.
We identified 133 lactylation-associated genes and constructed an eight-gene prognostic signature ( CCNA2, CALD1, CSRP2, MSN, RPS23, PSME3IP1, VIM, and SRRM2 ). High-score tumors exhibited poorer overall survival, enriched glycolytic, cell-cycle, and epithelial-mesenchymal transition pathways, and increased TP53 and KRAS mutations. Single-cell and protein-level analyses localized key genes to endothelial and macrophage compartments. Single-cell and protein-level analyses localized key genes primarily to endothelial and macrophage compartments. Furthermore, high-score tumors displayed reduced cytotoxic T- and NK-cell infiltration, increased M0/M2 macrophages, elevated TIDE scores, and lower immunophenoscores, indicating profound immune suppression. They also demonstrated higher stemness and reduced sensitivity to 5-fluorouracil, oxaliplatin, and sorafenib.
Lactylation-associated transcriptional programs delineate a metabolically active, immunosuppressed COAD subtype characterized by adverse prognoses and therapeutic resistance. This lactylation-based score serves as a clinically relevant biomarker and a promising target for combined metabolic-epigenetic and immunotherapeutic interventions.
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