研究概要
这些发现揭示了CCR5+ CD8+ T细胞状态与PD-1阻断疗法临床反应不佳之间的转录组关联。
中文摘要
许多患者对免疫检查点抑制剂(ICIs),尤其是PD-1/PD-L1阻断,产生不良临床反应。然而,与不良反应相关的趋化因子受体的转录组学特征仍未完全阐明。我们分析了来自非小细胞肺癌(NSCLC)和黑色素瘤队列的公开单细胞RNA测序数据集,并在肝细胞癌(HCC)和结直肠癌数据集中进行了额外的探索性分析。系统性地分析了临床对抗PD-1治疗有反应和无反应样本中CD8+ T细胞上趋化因子受体的表达。进行了差异基因表达、细胞状态评分、拟时序轨迹推断和配体-受体相互作用分析,以表征相关的转录状态和预测的细胞相互作用。肿瘤浸润CD8+ T细胞中CCR5转录本表达与对PD-1/PD-L1阻断治疗的较低反应性相关。CCR5+ CD8+ T细胞表现出与耗竭增加、干性降低和分化晚期相关的转录特征。拟时序推断提示CCR5表达沿推断的分化轨迹逐渐增加。配体-受体相互作用分析进一步鉴定了CCR5+ CD8+ T细胞与肿瘤相关髓系细胞之间预测的相互作用,在无反应肿瘤的髓系细胞群中观察到CCL3和CCL4表达升高。总之,这些发现揭示了CCR5+ CD8+ T细胞状态与PD-1阻断治疗不良临床反应之间的转录组学关联。这些观察结果支持CCL3/4-CCR5轴作为未来空间、功能和实验验证的候选通路。
展开英文摘要原文
Many patients develop poor clinical response to immune checkpoint inhibitors (ICIs), especially PD-1/PD-L1 blockade. However, transcriptomic features of chemokine receptors associated with poor response remain incompletely characterized. We analyzed publicly available single-cell RNA sequencing datasets from non-small-cell lung cancer (NSCLC) and melanoma cohorts, with additional exploratory analyses in hepatocellular carcinoma (HCC) and colorectal cancer datasets. Chemokine receptor expression on CD8+ T cells from clinical responsive and non-responsive samples to anti-PD-1 therapy was systematically profiled. Differential gene expression, cell-state scoring, pseudotime trajectory inference, and ligand-receptor interaction analysis were performed to characterize associated transcriptional states and predicted cellular interactions. CCR5 transcript expression in tumor-infiltrating CD8+ T cells was associated with lower responsiveness to PD-1/PD-L1 blockade therapy. CCR5+ CD8+ T cells exhibited transcriptional features associated with increased exhaustion, reduced stemness, and advanced differentiation. Pseudotime inference suggested progressively increased CCR5 expression along the inferred differentiation trajectory. Ligand-receptor interaction analysis further identified predicted interactions between CCR5+ CD8+ T cells and tumor-associated myeloid cells, with elevated expression of CCL3 and CCL4 observed in myeloid populations from non-responsive tumors. Together, these findings identify transcriptomic associations between CCR5+ CD8+ T cell states and poor clinical response to PD-1 blockade therapy. These observations support the CCL3/4-CCR5 axis as a candidate pathway for future spatial, functional, and experimental validation.
论文信息
- 作者
- Zhao Z、Liu Y、Wu Z、Qi C、Ning Y、Lin Y、Pang X、Qiang G
- 单位
- NHC Key Laboratory of Medical Immunology, Department of Immunology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Haidian District, Beijing 100191, China.China
- 期刊
- International journal of molecular sciences2026 May 30