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基于 ICD 的整合分型和预后模型揭示 KCNN4 是 NSCLC 的新治疗靶点

英文原题:Integrated ICD-based subtyping and prognostic model reveal KCNN4 as a novel therapeutic target in NSCLC.

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Integrated ICD-based subtyping and prognostic model reveal KCNN4 as a novel therapeutic target in NSCLC.

PubMed 2026/02/25(内容时间) Discov Oncol Q3 · IF 2.8(JCR 2025)

研究概要

本研究在NSCLC中识别出三种与ICD相关的TIME亚型,具有显著的转化潜力:Cluster 1患者是免疫检查点抑制剂的理想候选者;Cluster 2可能受益于联合治疗以克服耐药;Cluster 3需要积极的多模式治疗。此外,该预测模型增强了风险分层,改善了NSCLC患者的预后。

研究思路结论见上方概要

非小细胞肺癌(NSCLC)是最常见的肺癌类型,也是全球癌症相关死亡的主要原因。免疫原性细胞死亡(ICD)通过诱导免疫反应和重塑TIME来增强癌症治疗效果。虽然ICD增加细胞毒性T淋巴细胞浸润并减少免疫抑制成分,但与肺腺癌(LUAD)中ICD相关的特定TIME亚型仍未明确。

本研究利用癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)中的公开数据集,鉴定与ICD相关的差异表达基因。我们应用共识分子聚类将这些基因与临床表型整合,揭示了具有不同预后结局的NSCLC亚型。使用‘estimate’R包和‘CIBERSORT’对这些聚类的肿瘤免疫微环境进行了表征。利用LASSO Cox回归建立了预后模型,并在独立队列中进行了验证。功能验证涉及在PC-9肺癌细胞中靶向KCNN4基因的RNA干扰,包括定量PCR、细胞增殖实验、伤口愈合实验和Transwell侵袭实验。此外,还进行了分子对接和分子动力学模拟,以识别和验证靶向KCNN4的小分子药物。

ICD相关基因表达的无监督聚类 delineated 三种新的NSCLC亚型。Cluster 1以年轻患者为特征,表现出增强的免疫活性,伴有活化的CD4+和CD8+ T细胞的显著浸润,与良好的预后和对免疫治疗的响应相关。Cluster 2以女性为主,表现出免疫应答受抑制,伴有效应记忆T细胞和γδ T细胞减少,与较差的结果相关。Cluster 3与不同的癌症分期相关,表现出中等免疫活性,伴有较低的免疫细胞浸润和较高的肿瘤纯度,提示中等预后。一个综合预后模型将五个关键ICD相关基因(CSF2RB、CD3D、ADA2、KCNN4和AREG)的表达水平与关键临床因素相结合。在PC-9细胞中靶向沉默KCNN4显著降低了肿瘤侵袭性,支持其作为治疗靶点的作用。分子对接识别出四种有前景的小分子药物,其中ZINC000000001547(Hydroxystilbamidine)在分子动力学模拟中显示出稳定的相互作用。

展开英文摘要原文

BACKGROUNDS: Non-small cell lung cancer (NSCLC), the most common type of lung cancer, stands as a leading cause of cancer-related mortality worldwide. Immunogenic cell death (ICD )enhances cancer therapy efficacy by inducing immune responses and reshaping the TIME. While ICD increases cytotoxic T lymphocyte infiltration and reduces immunosuppressive elements, the specific TIME subtypes associated with ICD in lung adenocarcinoma (LUAD) remain undefined. METHODS: Publicly available datasets from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) were utilized in this study to identify differentially expressed genes related to ICD. We applied consensus molecular clustering to integrate these genes with clinical phenotypes, revealing distinct NSCLC subtypes with varying prognostic outcomes. The tumor immune microenvironments of these clusters were characterized using the ‘estimate’ R package ‘and ‘CIBERSORT’.A prognostic model was established utilizing LASSO Cox regression and validated across independent cohorts. Functional validation involved RNA interference targeting the KCNN4 gene in PC-9 lung cancer cells, including quantitative PCR, cell proliferation assays, wound healing assays, and Transwell invasion assays. Additionally, molecular docking and molecular dynamics simulations were performed to identify and validate small-molecule drugs targeting KCNN4. RESULTS: Unsupervised clustering of ICD-related gene expressions delineated three novel NSCLC subtypes. Cluster 1, characterized by younger patients, exhibited enhanced immune activity with significant infiltration of activated CD4+ and CD8+ T cells, correlating with a favorable prognosis and responsiveness to immunotherapy. Cluster 2, predominantly female, displayed suppressed immune responses with reduced effector memory T cells and γδ T cells, associated with poorer outcomes. Cluster 3, linked to varying cancer stages, showed moderate immune activity with lower immune cell infiltration and higher tumor purity, indicating an intermediate prognosis. A comprehensive prognostic model combined the expression levels of five key ICD-related genes (CSF2RB, CD3D, ADA2, KCNN4, and AREG) with critical clinical factors. Targeted silencing of KCNN4 in PC-9 cells significantly reduced tumor aggressiveness, supporting its role as a therapeutic target. Molecular docking identified four promising small-molecule drugs, with ZINC000000001547 (Hydroxystilbamidine) showing stable interactions in molecular dynamics simulations. CONCLUSIONS: This study identifies three distinct ICD-related TIME subtypes in NSCLC with significant translational potential: Cluster 1 patients are ideal candidates for immune checkpoint inhibitors; Cluster 2 may benefit from combination therapies to overcome resistance; and Cluster 3 requires aggressive multimodal treatments. Additionally, the predictive model enhances risk stratification, improving patient outcomes in NSCLC.

论文信息

作者
Yang Z、Yang Q、Li S、Han R、He H、Zhang R、Li H、Li Y
第一作者单位
Beijing Hospital of Traditional Chinese Medicine, Capital Medical University, No. 23, Houjie, Meishuguan, Dongcheng District, Beijing, China.China
通讯作者单位
Beijing University of Chinese Medicine Third Affiliated Hospital, No. 13, Anyuanli, Xiaoguan Xiejie, Anzhenmen, Chaoyang District, Beijing, China. doctorliuxiawei@126.com.China
期刊
Discover oncology2026 Feb 25
原文标识
PubMed 41741906 · DOI 10.1007/s12672-026-04651-8