RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Leukocyte immunoglobulin-like receptor subfamily B member 1 expression defines CD8+ T cell exhaustion in acute myeloid leukemia.
Leukocyte immunoglobulin-like receptor subfamily B member 1 expression defines CD8+ T cell exhaustion in acute myeloid leukemia.
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急性髓系白血病(AML)以 profound 免疫失调为特征,但其细胞毒性受损的机制仍不清楚。通过分析20例AML患者和20例健康供者的样本,我们整合了scRNA-seq(GSE223844)、bulk转录组(GSE37642、GSE71014)和TCGA-AML。采用单细胞图谱分析、BayesPrism解卷积、WGCNA和多种机器学习算法来定义免疫改变并构建预后模型,并通过RT-qPCR和多色流式细胞术进行外周血验证。
我们鉴定出11个免疫和祖细胞群体,显示出AML特异性变化,包括T/NK细胞耗竭和干样区室扩增。调控网络和配体-受体分析揭示了广泛的免疫抑制和细胞通讯破坏。解卷积显示CD8+ T细胞存在广泛的转录重塑,WGCNA鉴定出一个CD8+ T细胞基因模块。9个候选基因被纳入18个机器学习模型,其中岭回归生成了一个稳定的九基因预后特征。富集分析表明高危患者中TGF-β、TNF受体和TCR通路激活。LILRB1成为CD8+ T细胞和NK细胞中的中心免疫抑制枢纽,实验验证证实其在AML来源淋巴细胞中表达升高,同时细胞毒性受损。
总体而言,LILRB1是驱动细胞毒性功能障碍的关键免疫检查点,标志着耗竭的CD8+ T细胞和CD16+ NK细胞。九基因特征将CD8+ T细胞损伤与不良预后联系起来,而NK细胞的参与使LILRB1成为恢复抗白血病免疫的有前景的治疗靶点。
Acute myeloid leukemia (AML) is characterized by profound immune dysregulation, yet the mechanisms underlying impaired cytotoxicity remain unclear. By analyzing samples from 20 AML patients and 20 healthy donors, we integrated scRNA-seq (GSE223844), bulk transcriptomes (GSE37642, GSE71014), and TCGA-AML. Single-cell profiling, BayesPrism deconvolution, WGCNA, and multiple machine-learning algorithms were used to define immune alterations and construct a prognostic model, with peripheral blood validation through RT-qPCR and multicolor flow cytometry.
We identified 11 immune and progenitor populations showing AML-specific shifts, including depletion of T/NK cells and expansion of stem-like compartments. Regulatory network and ligand-receptor analyses revealed broad immune suppression and disrupted cellular communication. Deconvolution showed extensive transcriptional remodeling of CD8+ T cells, and WGCNA identified a CD8+ T-cell gene module.
Nine candidate genes were incorporated into 18 machine-learning models, with ridge regression generating a stable nine-gene prognostic signature. Enrichment analyses indicated activation of TGF-β, TNF receptor, and TCR pathways in high-risk patients. LILRB1 emerged as a central immunosuppressive hub in CD8+ T and NK cells, and experimental validation confirmed its elevated expression alongside impaired cytotoxicity in AML-derived lymphocytes.
Overall, LILRB1 serves as a key immune checkpoint driving cytotoxic dysfunction, marking exhausted CD8+ T cells and CD16+ NK cells. The nine-gene signature links CD8+ T-cell impairment to poor prognosis, while NK-cell involvement positions LILRB1 as a promising therapeutic target for restoring anti-leukemic immunity.
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