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基于单细胞转录组学的 TIL(肿瘤浸润淋巴细胞)与肝细胞癌作用及机制探索

英文原题:Exploration of the Roles and Mechanisms Between Tumor-Infiltrating Lymphocytes and Hepatocellular Carcinoma Based on Single-Cell Transcriptomics.

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Exploration of the Roles and Mechanisms Between Tumor-Infiltrating Lymphocytes and Hepatocellular Carcinoma Based on Single-Cell Transcriptomics.

PubMed 2025/08/20(内容时间) Int J Genomics Q3 · IF 2(JCR 2025)

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中文摘要

肝细胞癌(HCC)仍是全球重要的健康挑战,尤其是晚期患者的有效治疗选择有限。肿瘤免疫微环境(TIME)在HCC进展和治疗应答中发挥关键作用,其中TIL(肿瘤浸润淋巴细胞)是免疫活性的关键调节因素。

本研究探究TIL相关基因在NASH相关HCC(NASH-HCC)中的免疫抑制作用,并评估其作为独立预后因素的潜力。我们采用基因集富集分析(GSEA)和加权基因共表达网络分析(WGCNA)探究NASH-HCC中的免疫抑制并鉴定TIL相关基因模块。使用机器学习方法构建预后模型,并利用来自基因表达综合数据库(GEO)和癌症基因组图谱(TCGA)的多个队列进行验证。通过Kaplan-Meier生存分析和受试者工作特征(ROC)曲线评估模型预测能力。

此外,开展单细胞RNA测序(scRNA-seq)分析,考察TIL相关基因在TIME不同免疫细胞群中的作用。我们在HCC中鉴定出10种不同细胞类型,并发现T细胞的TIL通路活性最高;T细胞通过MIF信号在细胞间通讯中发挥关键作用。研究结果突出显示NASH-HCC中TIL的免疫抑制特性,并揭示其潜在预后意义,可能为未来免疫治疗策略提供参考。

展开英文摘要原文

Hepatocellular carcinoma (HCC) remains a major global health challenge, with limited effective treatment options, particularly in advanced-stage patients. The tumor immune microenvironment (TIME) plays a crucial role in HCC progression and treatment response, with tumor-infiltrating lymphocytes (TILs) being key modulators of immune activity. In this study, we investigated the immunosuppressive role of TIL-related genes in NASH-associated HCC (NASH-HCC) and identified their potential as independent prognostic factors.

We employed Gene Set Enrichment Analysis (GSEA) and Weighted Gene Coexpression Network Analysis (WGCNA) to explore immune suppression in NASH-HCC and identify TIL-related gene modules. Machine learning approaches were utilized to construct a prognostic model, validated using multiple cohorts from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA). The model's predictive power was assessed using Kaplan-Meier survival analysis and receiver operating characteristic (ROC) curves.

Furthermore, single-cell RNA sequencing (scRNA-seq) analysis was performed to examine the role of TIL-related genes in different immune cell populations within TIME.

We identified 10 distinct cell types in HCC and demonstrated that T cells exhibited the highest TIL pathway activity, playing a critical role in cellular communication via MIF signaling.

Our findings highlight the immunosuppressive nature of TILs in NASH-HCC and provide valuable insights into their prognostic significance, potentially guiding future immunotherapeutic strategies.

论文信息

作者
Shi T、Cheng D、Du X、Wang J、Jiang S、Yang L、Chen F、Gong C
第一作者单位
The First Clinical Medical College of Anhui Medical University, Hefei, China.China
通讯作者单位
Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University (Hefei First People's Hospital), Hefei, China.China
期刊
International journal of genomics2025
原文标识
PubMed 40881277 · DOI 10.1155/ijog/1575734