TCGA 转录组 TIL 免疫特征的全癌种比较分析

Efforts to understand the tumor microenvironment through basic science research and the cancer genome atlas (TCGA) data analysis have led to the creation of unique immune transcriptomic signatures from tumor-infiltrating lymphocytes (TIL).

However, no pan-cancer analysis has been conducted to compare the prognostic performance of these signatures using overall survival (OS) or progression-free interval (PFI) as endpoints.

We compiled a library of 146 TIL-immune signatures and evaluated gene signature score correlation with OS and PFI for 9,961 available TCGA samples across 33 tumor types. Zhang CD8 TCS demonstrated higher accuracy in prognosticating both OS and PFI across the pan-cancer landscape; however, variability was seen across cancer types and germ cell origin.

Cluster analysis compiled a group of six signatures (Oh. Cd8. MAIT, Grog. 8KLRB1, Oh. TIL_CD4. GZMK, Grog. CD4. TCF7, Oh. CD8. RPL, Grog. CD4. RPL32) whose association with OS and PFI could potentially be conserved across multiple neoplasms.