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从头设计的 pMHC 结合剂促进 T 细胞介导的对癌细胞的细胞毒性

英文原题:De novo-designed pMHC binders facilitate T cell-mediated cytotoxicity toward cancer cells.

查看英文原题

De novo-designed pMHC binders facilitate T cell-mediated cytotoxicity toward cancer cells.

PubMed 2025/07/24(内容时间) Science Q1 · IF 47.3(JCR 2025)

研究概要

CD8+ T细胞通过T细胞受体(TCRs)识别细胞内抗原,对于抵抗感染和癌症的适应性免疫至关重要。

中文摘要

CD8+ T 细胞通过 T 细胞受体(TCR)识别细胞内抗原,是抗感染和抗肿瘤适应性免疫的核心。然而,从患者材料中鉴定 TCR 仍然复杂。我们提出了一种快速从头设计 minibinder(miBd)的平台,利用最先进的生成模型来设计靶向癌症相关肽结合主要组织相容性复合体(pMHC)SLLMWITQC/HLA-A*02:01(NY-ESO-1)的 miBd。整合计算机交叉泛筛(in silico cross-panning)实现了对特异性的计算预筛选,分子动力学模拟则提高了体外成功率的可预测性。我们鉴定出一种高亲和力 NY-ESO-1 binder,并使用冷冻电子显微镜确认了其结构,将其整合入嵌合抗原受体后,可诱导对 NY-ESO-1+ 黑色素瘤细胞的杀伤。我们进一步设计并验证了针对结构未知的新抗原 pMHC 复合物 RVTDESILSY/HLA-A*01:01 的 binder,展示了精准免疫治疗的潜力。

展开英文摘要原文

The recognition of intracellular antigens by CD8 + T cells through T cell receptors (TCRs) is central for adaptive immunity against infections and cancer. However, the identification of TCRs from patient material remains complex. We present a rapid de novo minibinder (miBd) design platform leveraging state-of-the-art generative models to engineer miBds targeting the cancer-associated peptide-bound major histocompatibility complex (pMHC) SLLMWITQC/HLA-A*02:01 (NY-ESO-1). Incorporating in silico cross-panning enabled computational prescreening of specificity, and molecular dynamics simulations allowed for improved predictability of in vitro success. We identified a high-affinity NY-ESO-1 binder and confirmed its structure using cryo-electron microscopy, which, when incorporated in a chimeric antigen receptor, induced killing of NY-ESO-1 + melanoma cells. We further designed and validated binders to a neoantigen pMHC complex, RVTDESILSY/HLA-A*01:01, with unknown structure, demonstrating the potential for precision immunotherapy.

论文信息

作者
Johansen KH、Wolff DS、Scapolo B、Fernández-Quintero ML、Risager Christensen C、Loeffler JR、Rivera-de-Torre E、Overath MD
第一作者单位
Department of Health Technology, Technical University of Denmark, Kongens Lyngby, Denmark.Denmark
通讯作者单位
Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark.Denmark
文献类型
非美国政府资助研究
期刊
Science (New York, N.Y.)2025 Jul 24
原文标识
PubMed 40705893 · DOI 10.1126/science.adv0422