RNF43 p.G659fs 通过 PI3K/AKT/mTOR 信号通路和 HLA-E 上调导致 MSI-high 结直肠癌中 NK 细胞功能障碍
RNF43 p.G659fs leads to natural killer cell dysfunction in MSI-high colorectal cancer through PI3K/AKT/mTOR signaling and HLA-E up-regulation.
CELL INTELLIGENCE · 肿瘤细胞治疗研究
肿瘤细胞治疗研究
英文原题:Expression patterns, prognostic significance, and immune correlations of the TNFAIP8 family in acute myeloid leukemia: a comprehensive bioinformatics analysis.
Expression patterns, prognostic significance, and immune correlations of the TNFAIP8 family in acute myeloid leukemia: a comprehensive bioinformatics analysis.
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TNFAIP8 家族基因在 AML 发病机制和免疫调节中发挥不同作用。TNFAIP8L2 显示出作为预后生物标志物的前景,而 TNFAIP8 和 TNFAIP8L1 可能提示不良细胞遗传学风险。该研究强调了它们作为 AML 治疗靶点的潜力。
急性髓系白血病(AML)是一种高度侵袭性的血液系统恶性肿瘤,预后差且复发率高。虽然TNFAIP8基因家族(TNFAIP8、TNFAIP8L1、TNFAIP8L2和TNFAIP8L3)被认为与癌症和免疫调节有关,但其在AML中的作用仍不清楚。本研究利用生物信息学分析探讨了它们在AML中的表达、预后意义、遗传改变及免疫相关性。
使用UCSC XENA数据库评估TNFAIP8家族基因在AML中的表达水平及临床意义。采用Kaplan-Meier生存分析评估总生存期(OS)差异,并利用受试者工作特征(ROC)曲线评估这些基因的预后预测能力。通过cBioPortal平台分析基因改变,同时通过ssGSEA和Spearman相关分析检查免疫浸润。利用KEGG和GO数据库对共表达基因进行功能富集分析。
与正常组织相比,TNFAIP8、TNFAIP8L1、TNFAIP8L2和TNFAIP8L3在AML组织中显著高表达(P < 0.001)。然而,Kaplan-Meier生存分析显示,它们的表达水平与AML患者的OS之间无显著关联。ROC曲线分析显示,在该家族成员中,TNFAIP8L2具有最高的预测准确性(AUC = 1.000),其次是TNFAIP8L1(AUC = 0.728)、TNFAIP8(AUC = 0.709)和TNFAIP8L3(AUC = 0.629)。临床病理分析表明,TNFAIP8和TNFAIP8L1表达与不良细胞遗传学风险相关,而TNFAIP8L3表达与骨髓原始细胞升高强烈相关(P < 0.001)。突变分析显示基因改变频率较低,TNFAIP8L1是唯一在0.53%病例中存在突变的基因。免疫浸润分析表明,TNFAIP8和TNFAIP8L3与髓源性抑制细胞(MDSCs)呈正相关,而TNFAIP8L1表达与自然杀伤(NK)细胞富集相关。
Acute myeloid leukemia (AML) is a highly aggressive hematologic malignancy with poor prognosis and high relapse rates. While the TNFAIP8 gene family (TNFAIP8, TNFAIP8L1, TNFAIP8L2, and TNFAIP8L3) is implicated in cancer and immune regulation, its role in AML remains unclear. This study utilized bioinformatics analyses to investigate their expression, prognostic significance, genetic alterations, and immune associations in AML.
The expression levels and clinical significance of TNFAIP8 family genes in AML were evaluated using UCSC XENA databases. Kaplan-Meier survival analysis was performed to assess overall survival (OS) differences, and receiver operating characteristic (ROC) curves were utilized to evaluate the prognostic predictive abilities of these genes. Genetic alterations were analyzed using the cBioPortal platform, while immune infiltration was examined through ssGSEA and Spearman correlation analysis. Functional enrichment analysis of co-expressed genes was conducted using the KEGG and GO databases.
TNFAIP8, TNFAIP8L1, TNFAIP8L2, and TNFAIP8L3 were significantly overexpressed in AML tissues compared to normal tissues (P < 0.001). However, Kaplan-Meier survival analysis revealed no significant association between their expression levels and OS in AML patients. ROC curve analysis showed that TNFAIP8L2 had the highest predictive accuracy (AUC = 1.000) among the family members, followed by TNFAIP8L1 (AUC = 0.728), TNFAIP8 (AUC = 0.709), and TNFAIP8L3 (AUC = 0.629). Clinicopathological analysis indicated that TNFAIP8 and TNFAIP8L1 expressions were associated with poor cytogenetic risk, while TNFAIP8L3 expression correlated strongly with elevated bone marrow blasts (P < 0.001). Mutation analysis revealed a low frequency of genetic alterations, with TNFAIP8L1 being the only gene with mutations in 0.53% of cases. Immune infiltration analysis demonstrated that TNFAIP8 and TNFAIP8L3 were positively correlated with myeloid-derived suppressor cells (MDSCs), while TNFAIP8L1 expression was associated with natural killer (NK) cell enrichment.
TNFAIP8 family genes play distinct roles in AML pathogenesis and immune regulation. TNFAIP8L2 shows promise as a prognostic biomarker, while TNFAIP8 and TNFAIP8L1 may indicate adverse cytogenetic risk. The study highlights their potential as therapeutic targets in AML.
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