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使用 QuPath 与基于 StarDist 的模型自动评估口腔鳞状细胞癌 TIL(肿瘤浸润淋巴细胞)的数字化工作流程

英文原题:A Digital Workflow for Automated Assessment of Tumor-Infiltrating Lymphocytes in Oral Squamous Cell Carcinoma Using QuPath and a StarDist-Based Model.

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A Digital Workflow for Automated Assessment of Tumor-Infiltrating Lymphocytes in Oral Squamous Cell Carcinoma Using QuPath and a StarDist-Based Model.

PubMed 2024/12/01(内容时间) Pathologica Q2 · IF 2.8(JCR 2025)

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中文摘要

寻找可靠的口腔鳞状细胞癌(OSCC)预后标志物仍是重要需求。TIL(肿瘤浸润淋巴细胞),尤其是T淋巴细胞,在抗肿瘤免疫应答中发挥关键作用,并与良好预后密切相关。计算病理学已证明在组织病理图像分析中十分有效,可自动完成细胞检测、分类和分割等任务。本研究开发了一种基于StarDist的模型,可在OSCC苏木精-伊红(H&E)全切片图像(WSI)中自动检测T淋巴细胞,无需传统免疫组织化学(IHC)。研究者利用QuPath从标注切片生成训练数据集,并以IHC结果作为金标准。模型在癌症基因组图谱(TCGA)来源的OSCC图像上得到验证;生存分析显示,较高TIL密度与患者结局改善相关。本研究提出了一种高效、由AI驱动的OSCC自动免疫分析流程,可用于诊断和预后评估,且具有可重复、可扩展的特点。

展开英文摘要原文

The search for reliable prognostic markers in oral squamous cell carcinoma (OSCC) remains a critical need. Tumor-infiltrating lymphocytes (TILs), particularly T lymphocytes, play a pivotal role in the immune response against tumors and are strongly correlated with favorable prognoses. Computational pathology has proven highly effective for histopathological image analysis, automating tasks such as cell detection, classification, and segmentation.

In the present study, we developed a StarDist-based model to automatically detect T lymphocytes in hematoxylin and eosin (H&E)-stained whole-slide images (WSIs) of OSCC, bypassing the need for traditional immunohistochemistry (IHC). Using QuPath, we generated training datasets from annotated slides, employing IHC as the ground truth.

Our model was validated on Cancer Genome Atlas-derived OSCC images, and survival analyses demonstrated that higher TIL densities correlated with improved patient outcomes. This work introduces an efficient, AI-powered workflow for automated immune profiling in OSCC, offering a reproducible and scalable approach for diagnostic and prognostic applications.

论文信息

作者
Crispino A、Varricchio S、Ilardi G、Russo D、Di Crescenzo RM、Staibano S、Merolla F
第一作者单位
Department of Advanced Biomedical Sciences, Pathology Unit, University of Naples "Federico II", Naples, Italy.Italy
通讯作者单位
Department of Medicine and Health Sciences "V. Tiberio", University of Molise, Campobasso, Italy.Italy
期刊
Pathologica2024 Dec
原文标识
PubMed 39748724 · DOI 10.32074/1591-951X-1069