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探索 NK 细胞相关分子对胃癌患者预后及肿瘤微环境的影响:来自大样本人群的证据

英文原题:Exploring the effect of NK-cell related molecules on the prognosis and tumor microenvironment of gastric cancer patients: Evidence from large sample populations.

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Exploring the effect of NK-cell related molecules on the prognosis and tumor microenvironment of gastric cancer patients: Evidence from large sample populations.

PubMed 2024/06/27(内容时间) Heliyon

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研究概要

我们的发现有助于更全面地理解 NK 细胞在胃癌中的作用,并突出 MUCL1 作为一个有前景的治疗靶点。

研究思路结论见上方概要

自然杀伤(NK)细胞在抗肿瘤免疫中发挥重要作用,其参与已在多种癌症中得到证实。然而,仍需更深入地了解NK细胞影响胃癌进展的机制。

我们利用癌症基因组图谱(TCGA)数据库获取胃癌患者的转录谱、临床信息和突变数据。所有针对这些公开数据的分析均使用R软件及相关软件包进行。

我们使用多种算法评估胃癌样本中的肿瘤微环境。我们进行了差异表达分析,以确定与NK细胞相关的基因。利用这些数据,我们开发了一个包含三个关键NK细胞相关基因的预后模型:MAB21L2、ARPP21和MUCL1。该模型在训练组和验证组中显示出强大的预测性能。一致地,根据我们的模型被识别为高风险的患者具有更差的总生存率。为了进一步阐明高风险和低风险患者之间的生物学差异,我们进行了聚焦于生物学通路和免疫相关因素的富集分析。此外,我们观察到较高的风险评分与治疗无反应性之间存在相关性。有趣的是,发现高风险患者可能对axitinib更敏感。由于MUCL1在该模型中的潜在作用,我们选择其进行进一步研究。虽然MUCL1 mRNA水平在胃癌和配对正常组织中均升高,但使用Human Protein Atlas数据库进行的蛋白表达分析显示,肿瘤组织内MUCL1蛋白水平降低。

展开英文摘要原文

Natural killer (NK) cells play a significant role in anti-tumor immunity, and their involvement has been documented in various cancers. However, a deeper understanding of the mechanisms by which NK cells influence gastric cancer progression remains necessary.

We utilized the Cancer Genome Atlas (TCGA) database to acquire transcriptional profiles, clinical information, and mutation data for gastric cancer patients. R software and associated packages were employed for all analyses of this publicly available data.

We used multiple algorithms to evaluate the tumor microenvironment in gastric cancer samples. We performed differential expression analysis to pinpoint genes related to NK cells. Utilizing this data, we developed a prognostic model featuring three crucial NK cell-related genes: MAB21L2, ARPP21, and MUCL1. This model showed strong predictive performance in the training and validation groups. Consistently, patients identified as high-risk according to our model had worse overall survival rates. To further elucidate the biological differences between high-risk and low-risk patients, we performed enrichment analyses focusing on biological pathways and immune-related factors. Additionally, we observed a correlation between higher risk scores and non-responsiveness to treatment. Interestingly, high-risk patients were found to be potentially more sensitive to axitinib. We selected MUCL1 for further investigation due to its potential role in the model. While MUCL1 mRNA levels were elevated in both gastric cancer and paired normal tissues, protein expression analysis using the Human Protein Atlas database revealed a decrease in MUCL1 protein levels within tumor tissues.

Our findings contribute to a more comprehensive understanding of the role of NK cells in gastric cancer and highlight MUCL1 as a promising therapeutic target.

论文信息

作者
Li Y、Wu D、Xu A、Xu M、Fu B、Xiong W
单位
Department of Gastroenterology, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, 2800 Gongwei Road, Pudong New District, Shanghai, 201399, China.China
期刊
Heliyon2024 Jul 15
原文标识
PubMed 39071629 · DOI 10.1016/j.heliyon.2024.e33759