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通过 Jurkat 报告系统联合液滴微流控高通量筛选功能性新抗原及其特异性 T 细胞受体

英文原题:High-Throughput Screening of Functional Neo-Antigens and Their Specific T-Cell Receptors via the Jurkat Reporter System Combined with Droplet Microfluidics.

查看英文原题

High-Throughput Screening of Functional Neo-Antigens and Their Specific T-Cell Receptors via the Jurkat Reporter System Combined with Droplet Microfluidics.

PubMed 2023/06/10(内容时间) Anal Chem Q1 · IF 7.3(JCR 2025)

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中文摘要

T细胞受体(TCR)工程化T细胞能够精确识别源自肿瘤细胞胞内蛋白和表面蛋白的广泛靶点。TCR-T过继性细胞疗法在实体瘤免疫治疗中已显示出安全性和有前景的疗效。然而,抗原特异性功能性TCR筛选耗时且昂贵,限制了其在临床上的应用。在此,我们开发了一种基于液滴微流控技术的新型集成抗原-TCR筛选平台,能够实现高通量肽-主要组织相容性复合体(pMHC)与TCR的配对筛选,具有高灵敏度和低背景信号。我们引入DNA条形码技术标记负载候选肽抗原的抗原呈递细胞和Jurkat报告细胞,以检测pMHC-TCR候选物的特异性。结合下一代测序流程,对DNA条形码的解读以及Jurkat T细胞活化通路的基因表达水平提供了清晰的肽-MHC-TCR识别关系。我们的原理验证研究表明,该平台可实现pMHC-TCR配对高通量筛选,有望用于临床应用中候选pMHC-TCR的交叉反应性和脱靶高通量配对检测。

展开英文摘要原文

T-cell receptor (TCR)-engineered T cells can precisely recognize a broad repertoire of targets derived from both intracellular and surface proteins of tumor cells. TCR-T adoptive cell therapy has shown safety and promising efficacy in solid tumor immunotherapy.

However, antigen-specific functional TCR screening is time-consuming and expensive, which limits its application clinically.

Here, we developed a novel integrated antigen-TCR screening platform based on droplet microfluidic technology, enabling high-throughput peptide-major histocompatibility complex (pMHC)-to-TCR paired screening with a high sensitivity and low background signal.

We introduced DNA barcoding technology to label peptide antigen candidate-loaded antigen-presenting cells and Jurkat reporter cells to check the specificity of pMHC-TCR candidates. Coupled with the next-generation sequencing pipeline, interpretation of the DNA barcodes and the gene expression level of the Jurkat T-cell activation pathway provided a clear peptide-MHC-TCR recognition relationship.

Our proof-of-principle study demonstrates that the platform could achieve pMHC-TCR paired high-throughput screening, which is expected to be used in the cross-reactivity and off-target high-throughput paired testing of candidate pMHC-TCRs in clinical applications.

论文信息

作者
Li Y、Qi J、Liu Y、Zheng Y、Zhu H、Zang Y、Guan X、Xie S
第一作者单位
College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.China
通讯作者单位
BGI-Shenzhen, Shenzhen 518083, China.China
文献类型
非美国政府资助研究
期刊
Analytical chemistry2023 Jun 27
原文标识
PubMed 37300490 · DOI 10.1021/acs.analchem.3c01754