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对 33 种人类癌症的综合分析揭示了溶质载体家族 35 成员 A2 的临床意义和免疫治疗价值

英文原题:Comprehensive analysis of 33 human cancers reveals clinical implications and immunotherapeutic value of the solute carrier family 35 member A2.

PubMed 2023/05/18(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

研究概要

我们的研究揭示,SLC35A2在20种癌症中上调,包括肺腺癌(LUAD)、乳腺浸润性癌(BRCA)、结肠腺癌(COAD)和肺鳞状细胞癌(LUSC)。在五种癌症类型中,SLC35A2的上调表明预后不良。此外,在包括BRCA和COAD在内的13种癌症类型中,SLC35A2的过表达与淋巴细胞浸润减少呈正相关。基于多项临床试验的数据,表现出高SLC35A2表达的LUAD、LUSC、SKCM和BLCA患者可能经历改善的免疫治疗反应。因此,SLC35A2可被视为多种肿瘤预后和免疫治疗疗效的潜在预测生物标志物。我们的研究为进一步探究其预后和治疗潜力提供了理论基础。

研究思路结论见上方概要

溶质载体家族35成员A2(SLC35A2)属于人类核苷糖转运蛋白SLC35溶质载体家族,已在多种肿瘤和赘生物中显示出调控作用。然而,SLC35A2在人类癌症中的功能仍有待系统评估。关于SLC35A2在临床实践和免疫治疗反应中的预测能力,目前认识仍然有限。

我们从Molecular Taxonomy of Breast Cancer International Consortium、The Cancer Genome Atlas、Gene Expression Omnibus、Chinese Glioma Genome Atlas和Human Protein Atlas数据库中获取了SLC35A2在多种肿瘤中的基因表达和蛋白水平。通过免疫组织化学验证了SLC35A2水平。通过Kaplan-Meier生存分析和Cox回归分析评估其预后预测价值。使用Spearman相关性分析进行SLC35A2表达与DNA甲基化、遗传改变、肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)和肿瘤微环境之间的相关性分析。使用基因集变异分析探索SLC35A2在不同人类癌症中可能的下游通路。通过EPIC、CIBERSORT、MCP-counter、CIBERSORT-ABS、quanTIseq、TIMER和xCell算法评估SLC35A2在肿瘤免疫微环境中的潜在作用。通过肿瘤免疫功能障碍和排斥(TIDE)评分以及四个独立免疫治疗队列评估不同表达条件下SLC35A2免疫治疗反应的差异,其中包括膀胱尿路上皮癌(BLCA,N = 299)、非小细胞肺癌(NSCLC,N = 72和N = 36)和皮肤黑色素瘤(SKCM,N = 25)患者。使用CellMiner数据库和分子对接鉴定潜在药物。

SLC35A2在23种癌症中表现出异常高表达或低表达,并与预后显著相关。在多种癌症中,SLC35A2表达与哺乳动物雷帕霉素靶蛋白复合物1信号传导呈正相关。多种算法免疫浸润分析提示,SLC35A2表达与浸润免疫细胞呈负相关,这些免疫细胞包括多种肿瘤中的CD4+T细胞、CD8+T细胞、B细胞和NK 细胞。此外,SLC35A2表达与泛癌免疫检查点、TMB、MSI和TIDE基因显著相关。SLC35A2对多种癌症患者的免疫治疗反应显示出显著的预测价值。鉴定出两种药物,vismodegib和abiraterone,且细胞色素P17与abiraterone的自由结合能高于SLC35A2与abiraterone的自由结合能。

展开英文摘要原文

BACKGROUND: Solute carrier family 35 member A2 (SLC35A2), which belongs to the SLC35 solute carrier family of human nucleoside sugar transporters, has shown regulatory roles in various tumors and neoplasms. However, the function of SLC35A2 across human cancers remains to be systematically assessed. Insights into the prediction ability of SLC35A2 in clinical practice and immunotherapy response remains limited. MATERIALS AND METHODS: We obtained the gene expression and protein levels of SLC35A2 in a variety of tumors from Molecular Taxonomy of Breast Cancer International Consortium, The Cancer Genome Atlas, Gene Expression Omnibus, Chinese Glioma Genome Atlas, and Human Protein Atlas databases. The SLC35A2 level was validated by immunohistochemistry. The predictive value for prognosis was evaluated by Kaplan-Meier survival and Cox regression analyses. Correlations between SLC35A2 expression and DNA methylation, genetic alterations, tumor mutation burden (TMB), microsatellite instability (MSI), and tumor microenvironment were performed using Spearman's correlation analysis. The possible downstream pathways of SLC35A2 in different human cancers were explored using gene set variation analysis. The potential role of SLC35A2 in the tumor immune microenvironment was evaluated via EPIC, CIBERSORT, MCP-counter, CIBERSORT-ABS, quanTIseq, TIMER, and xCell algorithms. The difference in the immunotherapeutic response of SLC35A2 under different expression conditions was evaluated by the tumor immune dysfunction and exclusion (TIDE) score as well as four independent immunotherapy cohorts, which includes patients with bladder urothelial carcinoma (BLCA, N = 299), non-small cell lung cancer (NSCLC, N = 72 and N = 36) and skin cutaneous melanoma (SKCM, N = 25). Potential drugs were identified using the CellMiner database and molecular docking. RESULTS: SLC35A2 exhibited abnormally high or low expression in 23 cancers and was significantly associated with the prognosis. In various cancers, SLC35A2 expression and mammalian target of rapamycin complex 1 signaling were positively correlated. Multiple algorithmic immune infiltration analyses suggested an inverse relation between SLC35A2 expression and infiltrating immune cells, which includes CD4+T cells, CD8+T cells, B cells, and natural killer cells (NK) in various tumors. Furthermore, SLC35A2 expression was significantly correlated with pan-cancer immune checkpoints, TMB, MSI, and TIDE genes. SLC35A2 showed significant predictive value for the immunotherapy response of patients with diverse cancers. Two drugs, vismodegib and abiraterone, were identified, and the free binding energy of cytochrome P17 with abiraterone was higher than that of SLC35A2 with abiraterone. CONCLUSION: Our study revealed that SLC35A2 is upregulated in 20 types of cancer, including lung adenocarcinoma (LUAD), breast invasive carcinoma (BRCA), colon adenocarcinoma (COAD), and lung squamous cell carcinoma (LUSC). The upregulated SLC35A2 in five cancer types indicates a poor prognosis. Furthermore, there was a positive correlation between the overexpression of SLC35A2 and reduced lymphocyte infiltration in 13 cancer types, including BRCA and COAD. Based on data from several clinical trials, patients with LUAD, LUSC, SKCM, and BLCA who exhibited high SLC35A2 expression may experience improved immunotherapy response. Therefore, SLC35A2 could be considered a potential predictive biomarker for the prognosis and immunotherapy efficacy of various tumors. Our study provides a theoretical basis for further investigating its prognostic and therapeutic potentials.

论文信息

作者
Xu S、Chen X、Fang J、Chu H、Fang S、Zeng L、Ma H、Zhang T
第一作者单位
Department of Thoracic Surgery, Jiangmen Central Hospital, Jiangmen, Guangdong, China.China
通讯作者单位
Scientific Research Center, The Seventh Affiliated Hospital, Sun Yat-Sen University, Shenzhen, Guangdong, China.China
文献类型
非美国政府资助研究
期刊
Frontiers in immunology2023
原文标识
PubMed 37275857 · DOI 10.3389/fimmu.2023.1155182